Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03888 ATGCAAAGAGGAACAACAGAAGTTGAAGAAGAAGTAGTGTCAAGGGGTTCTAAGTGCCAAGACTGTGGGAACCAAGCGAAGAAGGAATGTTCATATTCAAGGTGCAGAACTTGTTGCAAGAACAAAGGCTTTCACTGCCAAACCCATGTCAAGAGTACATGGACTCCTGTGGATAGGAGGCGCAACAAGGATCATCCACCTTCATCTTCGCACAACTTTCACACAGATAATATTCCTCAAAACCACAACCAGATCAATCCATATTCAGTTTCAGGTTTAGAGACGAAATTTCCTTGTGCTACGAATTCGATGGCTATGTTTCGGTGCGTTCAGGTTCGCTCCATGGATGATGCGGTAAATGAAATAGCGTATCAAACAAGTGTGAACATTGGGGGGCGTGTGTTTAGTGGAATACTATATGACGAAGGCCCTGAAGAAAGGTATAAGATTGTTAACAAGGGTGAGAGTTGCAGTGGTGTTGTTGATGAACAGCATGGTTCAATCCACAGTAGAGATAGCAGTGACCCTTCTTTTCCTCCACCACCATATCCATTTCCACTTGCTTCCTTCAGACCCGGTATGCCATATTTCCCATACCCAAGATCTTAA 609 0.4384 MQRGTTEVEEEVVSRGSKCQDCGNQAKKECSYSRCRTCCKNKGFHCQTHVKSTWTPVDRRRNKDHPPSSSHNFHTDNIPQNHNQINPYSVSGLETKFPCATNSMAMFRCVQVRSMDDAVNEIAYQTSVNIGGRVFSGILYDEGPEERYKIVNKGESCSGVVDEQHGSIHSRDSSDPSFPPPPYPFPLASFRPGMPYFPYPRS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03888 202 MobiDBLite consensus disorder prediction 175 192 - -
Viun9g03888 202 NCBIfam LRP1 C-terminal domain 96 144 IPR006511 -
Viun9g03888 202 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 153 IPR007818 GO:0003700|GO:0006355
Viun9g03888 202 MobiDBLite consensus disorder prediction 57 82 - -
Viun9g03888 202 MobiDBLite consensus disorder prediction 161 192 - -
Viun9g03888 202 Pfam Domain of unknown function (DUF702) 16 145 - -
Viun9g03888 202 NCBIfam putative zinc finger domain, LRP1 type 18 60 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03888 Viun-Chr9 43142132 43143448 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun9g03888 DUF702 3.2e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03888 9 43142132 43143448 Viun9g03888 9 43142132 43143448 ECH
Viun9g03630 9 41743166 41746070 Viun9g03888 9 43142132 43143448 ECH
Viun9g03888 9 43142132 43143448 Viun2g01914 2 27891321 27893998 ECH