Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03636 ATGAAGATCCAGTGCGATGTCTGTAACGAGAACCACGCTTCTTTATTCTGCACCGCCGATGAAGCCGCCCTCTGCGACGACTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCCTCCAAACACCACCGCTTCTCTCTCACCCACCCCTCTGCTAAGCATTTTCCTGTCTGTGATGTTTGCCAGGAGAAAAGAGCTTTTGTGTTTTGTCAGCAAGATAGAGCAATTCTGTGCAAAGACTGTGACGTGTCCATTCATTCTGTTAACGAACTCACCAAGAACCATAGCAGGTTTCTTCTCACCGGGATCAAGTTCTCTACTTCTGCCATGCCTTATTCTTCTTCATCATCACCCAAGAAAAACCCAAACCCTCTTCTCGTTACTTCACACGCACCTTCCAATCCTCCTTCAACACCCTCACCTCCTAAGCCTGGAGGAATCCTGCAAACAAATCAAGCACCGGGTTTCACTGGTAGCAGCATATCAGAGTACTTGATAAACACTATCCCAGGCATGAAGTTCGAAGATTTTCTCGATTCCCATTCAACTTTTGATTGCTCTAAGAATGGTGATGAAATGTTGTCGGCGTTTGGTGAGGGAAACATGGTTTCGTTCTCCTCTGGAGGGATCTGGGTTCCTCAAGCGCCACCTTCTGCGGGTGCTGCTGCATGTTGGGAAGAGATGGGTGAAAAGAATGGGTACAGAGAGGGAAGGAAAGGTAGCGTTAGATCAAGTTTTGGCGATGATAATAATTTCGTAGTTCCTCAGATGAGTCCTCCCAGTAACGTTCCCAAGAAATCCAGGTTTCTTTGGTAG 816 0.4792 MKIQCDVCNENHASLFCTADEAALCDDCDHRVHHANKLASKHHRFSLTHPSAKHFPVCDVCQEKRAFVFCQQDRAILCKDCDVSIHSVNELTKNHSRFLLTGIKFSTSAMPYSSSSSPKKNPNPLLVTSHAPSNPPSTPSPPKPGGILQTNQAPGFTGSSISEYLINTIPGMKFEDFLDSHSTFDCSKNGDEMLSAFGEGNMVSFSSGGIWVPQAPPSAGAAACWEEMGEKNGYREGRKGSVRSSFGDDNNFVVPQMSPPSNVPKKSRFLW 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03636 271 SMART bboxneu5 4 47 IPR000315 GO:0008270
Viun9g03636 271 SMART bboxneu5 53 100 IPR000315 GO:0008270
Viun9g03636 271 CDD Bbox1_BBX-like 5 47 - -
Viun9g03636 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun9g03636 271 MobiDBLite consensus disorder prediction 111 133 - -
Viun9g03636 271 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Viun9g03636 271 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Viun9g03636 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 260 - -
Viun9g03636 271 FunFam B-box zinc finger protein 21 1 98 - -
Viun9g03636 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Viun9g03636 271 MobiDBLite consensus disorder prediction 111 152 - -
Viun9g03636 271 MobiDBLite consensus disorder prediction 244 263 - -
Viun9g03636 271 CDD Bbox1_BBX-like 57 100 - -
Viun9g03636 271 Gene3D Classic Zinc Finger 1 95 - -
Viun9g03636 271 MobiDBLite consensus disorder prediction 235 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03636 Viun-Chr9 41790441 41791923 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun9g03636 zf-B_box 4.7e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03636 9 41790441 41791923 Viun9g03636 9 41790441 41791923 ECH
Viun8g00143 8 911916 913581 Viun9g03636 9 41790441 41791923 PCT