Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03601 ATGGAGTCAAGTCGTGCAACCCTGGGTGGCATTCTGGCTAAAGTTAGTGAGGGAACTGGAAGAAACAGGAGAAGTGGGTTCTGGGGTGAGAGTACAAGGGGAAGTGGGAACACAAGGTTTTTGAGTGTTCAATCATGCAAAACTTCACGAACCAGTAAGAATCTTAGAAACTCCAAGCCTCGTGGAGTTGCACGTGCTGTTCTCACATCAGACATCAACGAAGATTCCGTGGCATATCAGAGGGTGCCCACTTTTGAGACCCCCGAAGTGAACCCAAAAAGCGTGGCTTCTATAATTTTGGGTGGAGGTGCAGGAACTCGTCTCTTTCCTCTTACTGGCAGAAGAGCCAAACCAGCGGTTCCAATTGGTGGGTGTTATAGACTCATAGATATCCCCATGAGCAACTGCATCAATAGTGGCATCAGAAAAATATTCATTTTGACGCAGTTTAACTCTTTTTCTCTCAACCGCCACCTGTCCCGGACATACAGCTTTGGAAATGGCATGAATTTTGGAGACGGTTTTGTGGAGGTCTTGGCTGCTACTCAGACGCCTGGAGAGGCAGGGAAGAAATGGTTCCAGGGAACAGCTGATGCTGTTAGGCAATTTATTTGGGTTTTTGAGGATGCCAAGAACAAGAATGTGGAGCATATATTGATACTTTCTGGGGATCATCTTTACCGGATGGACTATATGGACTTTGTACAGAGACACGTTGACACGAATGCTGATATCACAGTTTCATGTGTTCCCATGGATGACAGCCGGGCATCAGATTATGGACTGATGAAAATTGATAAAACCGGACGAATTGTACAGTTTGCAGAAAAGCCAAAGGGATCAGATCTAAAGGCTATGCGTGTTGACACTACTCTTCTAGGGTTATCGCCACAAGAAGCAGAAAAACATCCTTATATTGCATCCATGGGTGTCTACGTGTTTAGAACTGAAACTCTGCTGCAACTATTAAGATGGAAATGTTCTTCATTCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAGCGAGCACAATGTCCAGGCATATTTGTTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAACCTTGCCCTAACAGAACAGCCTCCTAAATTTGAGTTTTATGATCCAAAGACACCTTTCTTCACTTCCCCAAGATTCCTCCCCCCCACTAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATTTCTCACGGTTGCTTCTTGAGGGAGTGTAGCGTTCAGCACTCTATTGTGGGAGTGCGCTCACGTTTAGAATCTGGTGTGGAGCTTCAGGATACCATGATGATGGGTGCTGATTACTATCAGACCGAGTCAGAAATTGCATCTTTGCTGGCAGAAGGAAAGGTTCCAATCGGTGTTGGGGAAAATACAAAAATCAGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGATCATTGCAAATGCAGATGGTGTTGAAGAAGCTGATAGGGCCAAGGAAGGATTCTACATAAGGTCTGGCATCACGATTACACTGAAAAATGCAACCATTAAAGATGGAACAGTTATATGA 1587 0.4386 MESSRATLGGILAKVSEGTGRNRRSGFWGESTRGSGNTRFLSVQSCKTSRTSKNLRNSKPRGVARAVLTSDINEDSVAYQRVPTFETPEVNPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYSFGNGMNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMDFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIVQFAEKPKGSDLKAMRVDTTLLGLSPQEAEKHPYIASMGVYVFRTETLLQLLRWKCSSFNDFGSEIIPSAVSEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVELQDTMMMGADYYQTESEIASLLAEGKVPIGVGENTKIRNCIIDKNAKIGRNVIIANADGVEEADRAKEGFYIRSGITITLKNATIKDGTVI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03601 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 307 317 IPR005836 GO:0005978|GO:0008878
Viun9g03601 528 Pfam Nucleotidyl transferase 97 374 IPR005835 GO:0009058
Viun9g03601 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 192 200 IPR005836 GO:0005978|GO:0008878
Viun9g03601 528 FunFam Glucose-1-phosphate adenylyltransferase 76 393 - -
Viun9g03601 528 Gene3D Hexapeptide repeat proteins 394 528 - -
Viun9g03601 528 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 83 393 IPR029044 -
Viun9g03601 528 SUPERFAMILY Nucleotide-diphospho-sugar transferases 95 489 IPR029044 -
Viun9g03601 528 CDD ADP_Glucose_PP 98 359 - -
Viun9g03601 528 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 48 528 IPR011831 GO:0005978|GO:0008878
Viun9g03601 528 SUPERFAMILY Trimeric LpxA-like enzymes 390 528 IPR011004 -
Viun9g03601 528 NCBIfam glucose-1-phosphate adenylyltransferase 96 492 IPR011831 GO:0005978|GO:0008878
Viun9g03601 528 CDD LbH_G1P_AT_C 396 522 - -
Viun9g03601 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 101 120 IPR005836 GO:0005978|GO:0008878
Viun9g03601 528 FunFam Glucose-1-phosphate adenylyltransferase 394 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03601 Viun-Chr9 41536905 41540729 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03601 9 41536905 41540729 Viun9g03601 9 41536905 41540729 ECH
Viun8g00186 8 1159706 1162956 Viun9g03601 9 41536905 41540729 PCT