Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03500 ATGTCTGGTCTGGGTGAACGCCAAACGGTTCCCCTTTCGGTGCTGCTGAAGCGTGAGTTGGCCAACGAGAAAACCGAGAAGCCGGATGTTGTCATCGTGCACGGTCAAGCCAGTGAGAATAAGAAAGGAGAGGATTTCACGCTGTTGAAGACGGAATGCCAGAGGGTGGTGGGAGATGGGGTTTCTACGTATTCTGTTTTTGGGCTATTTGATGGACATAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTGAACAACGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGACTGGGTTTCAGCGTTACCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAAAGAAAAGCACAAACATCAGGAACAACTGCAACCTTCATGATCATAGATGGATGTGTTGTGACAGTCGCATCAGTTGGTGATTCCCGTTGCATACTTGAACCTCATGAGGGTGGGATGTATTACTTGTCAGCAGACCATAGACTAGATAGCAACGAAGAGGAGAGGATCCGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACTGGGGGAGGCACAGAGGTTGGTCCTTTGAGATGTTGGCCAGGTGGTTTGTGTCTCTCCCGGTCCATTGGTGACAAGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCTACTGTTGGAGGCAGAATCATTATCAGCAGTGATGGTGTCTGGGATGCTCTAACAGCAGAAATGGCCCTTGATTGCTGTCGTGGCATGTCAGCTGAGGTTGCGGCACCACATATTGTGAAAGAAGCCGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGATGTATATCCGCAGGAGAAGCCACCTACTTCTTCGGCAACACAAAAGAAACCGGCAAAAGGAAGGTTCAAGTCCATTTTTCGAAAAAAGTCCTCCGAATCATCATCTTACGTTGACAAACAATACCTTGAGCCAGATGTGGTACAGGAACTATACGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTGGAAACAAAATATCCGCTCTGCAACATGTTCAAGTTGTTTGTCTGCGCAGTGTGTCAGGTAGAGATGAAACCTGGGGAGGGTATTTCCATACACGTGGGTGCGTCTAATCCAGGAAGTTTGCGTCCCTGGGATGGACCTTTCCTTTGTTCAAGTTGCCAGGAGAAGAGAGAAGCCATGGAAGGAAAGCGAACATCAGATAGACTTAGCAGCGGAAGTGACTAA 1290 0.4674 MSGLGERQTVPLSVLLKRELANEKTEKPDVVIVHGQASENKKGEDFTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDDWVSALPRALVAGFVKTDKDFQRKAQTSGTTATFMIIDGCVVTVASVGDSRCILEPHEGGMYYLSADHRLDSNEEERIRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDKDVGEFIVPVPHVKQVKLSTVGGRIIISSDGVWDALTAEMALDCCRGMSAEVAAPHIVKEAVQAKGLRDDTTCIVIDVYPQEKPPTSSATQKKPAKGRFKSIFRKKSSESSSYVDKQYLEPDVVQELYEEGSAMLSERLETKYPLCNMFKLFVCAVCQVEMKPGEGISIHVGASNPGSLRPWDGPFLCSSCQEKREAMEGKRTSDRLSSGSD 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03500 429 PANTHER PROTEIN PHOSPHATASE 34 294 IPR015655 GO:0004722|GO:0006470
Viun9g03500 429 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
Viun9g03500 429 CDD PP2Cc 40 295 IPR001932 -
Viun9g03500 429 SUPERFAMILY PP2C-like 40 295 IPR036457 -
Viun9g03500 429 Pfam Protein phosphatase 2C 59 279 IPR001932 -
Viun9g03500 429 SMART PP2C_4 23 293 IPR001932 -
Viun9g03500 429 FunFam probable protein phosphatase 2C 12 34 301 - -
Viun9g03500 429 Gene3D - 21 304 IPR036457 -
Viun9g03500 429 SMART PP2C_SIG_2 48 295 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03500 Viun-Chr9 40957417 40962680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03500 1 429 PP2C-type Phosphatase Gene Family AT1G47380 75.814 0.0 686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03500 9 40957417 40962680 Viun9g03500 9 40957417 40962680 ECH
Viun8g00315 8 1979274 1984290 Viun9g03500 9 40957417 40962680 PCT