Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03462 ATGCTCTCTCTCCTCTTCTCTAAAAACATTTTTATCTATCCTTTCCCTTCCCTCACCCTTCTCATTCTCACTCTCGTTCTTCCTCACACCACCCTCTCTTTCTCTCCTCTTCCAATGGCTCTTCTTCTTGACAACTGTGAAGGCATTTTACTCTCCCTGGACTCACACAAATCAGTGCCGGCTCCTTTCCTCACCAAAACATACCAACTCGTCGACGACCCCGCCACAGATCACATAGTTTCTTGGGGTGAAGACGACACCACTTTCGTCGTTTGGCGTCCTCCTGAGTTCGCCAGAGACCTTCTTCCCAACTACTTCAAGCACAACAACTTCTCCAGTTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGATTGTACCAGACCGATGGGAGTTCGCCAACGAATTCTTCAAGAAGGGGGAGAAACACTTGTTGTGCGAGATCCATCGGAGAAAAACCGCTCAGCCTCAACAAGGGACCATGAATCACCATCACCACCATTCACATTCTCCACTCGGAGTCAACGTTAGCGTTCCCACTTTCTTTCCCTTTTCCAGCAGAGTCAGCATCTCTCCCTCCAACGACTCCGACGACCAAACCAATTGGTGTGACTCTCCGCCACGTGGAGCCACCTCATTGATGAACGGTGCAGCCAACTACAGCACTTCCGTCACCGCGCTTTCCGAGGACAACGAGAGACTCAGGCGAAGCAACAACATGCTCATGTCGGAACTCGCGCACATGAAGAAGCTTTACAATGACATTATCTATTTCGTTCAGAACCATGTCAAGCCGGTGGCTCCAAGCAACTCTTACTCTTCTTCTTTGCTACTGTGTAATACACCCTCGGCTACTCCGATAAATGGGGGCAATGTTTCGATGATGCAAAGGCCAATGAACCAGCTTCTGGGGTATTATTCTAATAACCCTAAGCAAGGAACTACTCCAATAGCTCAACATCAGCAACATCAACAAAATCAACCTCAGACCTACGTTGTGAACTCCCCCACCAACACATCGAGGAGTTCTATAACGATTGTTGAAGGGCCTGGCGGTAACGTTAACAGCTGCAAGACGAAGCTTTTTGGCGTGTCGCTGCAGTCAAAGAAAAGGGTGCACCCCGATTATGGATCTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAGGATGACTTGGGGTTGAATCTCATGCCTCCGTCCACTTGTTAG 1218 0.4869 MLSLLFSKNIFIYPFPSLTLLILTLVLPHTTLSFSPLPMALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGTMNHHHHHSHSPLGVNVSVPTFFPFSSRVSISPSNDSDDQTNWCDSPPRGATSLMNGAANYSTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPSATPINGGNVSMMQRPMNQLLGYYSNNPKQGTTPIAQHQQHQQNQPQTYVVNSPTNTSRSSITIVEGPGGNVNSCKTKLFGVSLQSKKRVHPDYGSNSETNKARLVLEKDDLGLNLMPPSTC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03462 405 FunFam Heat stress transcription factor B-4 55 153 - -
Viun9g03462 405 SUPERFAMILY "Winged helix" DNA-binding domain 60 152 IPR036390 -
Viun9g03462 405 PRINTS Heat shock factor (HSF) domain signature 63 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03462 405 PRINTS Heat shock factor (HSF) domain signature 114 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03462 405 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03462 405 Pfam HSF-type DNA-binding 63 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03462 405 SMART hsfneu3 59 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03462 405 ProSitePatterns HSF-type DNA-binding domain signature. 102 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03462 405 Gene3D - 55 154 IPR036388 -
Viun9g03462 405 Coils Coil 225 245 - -
Viun9g03462 405 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 56 330 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03462 Viun-Chr9 40824240 40826101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03462 39 404 HSF AT1G46264 55.297 3.77e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun9g03462 HSF_DNA-bind 3.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03462 9 40824240 40826101 Viun9g03462 9 40824240 40826101 ECH
Viun8g00347 8 2190967 2192471 Viun9g03462 9 40824240 40826101 PCT