Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03461 ATGCAAGGGCAGAGAGGTACAGTTGGTCCAATGCCAGAAACCTTAGAATTTGATTGTGGCTCTACGCCAGGTAATTCGACTGTGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCCGGTGATATGAACTCACCTTATGTGAATTCTATTAATCATGAATGGCAAAATTTTAGTGGATGGAGCTTAGGGGAGCCAAGTTCCAGCAATACCCCAAATGAGATTAACAATAATGAGCAAAAACGAGAACTTGGATGGACATCAACCATTACTGCTGGTGCGTTGCCTGGTGCAAGTCTAGAAGAAAGGCACCTTGAACCAACCAATACACTTTCTCTAGACAATGATAATACAAGTCCTATGTACATGCGCAATCCCGAGACTCGTTTAACGTCCCAGAATCTCAACCTAAATGCAGGTTTAGCGGATAGTGGCAATGATAATAGTCAACATCTGGAGCTCCCGAACTTAAACATGTCTAGTGGGTCATCAAATGAGTGCTTGCCATCTAATGTTGGATCTGGTTCTTTTTTGCTTCCATCTGCAAATAATGGATTCCTGGTAGAAGGTTCTGATGGTAGGCCAAGCTCTCTTGATACTCGACGAGTCTCTTGTAAAAGAAAGGCTGTTGAAGGAAATAATGGACAATCTTCAGATGCTGGAAGTTCTAGCTACAATCAGCATGCAGATGGTAGTGTTTGGCATGCGATTCCTACTCAGGATAATGCTGGAAGTAGTTCAAATAGAGCTGTATCCTCAGAGCAGGTAAATGCAAGACTTGGCCTGGGAATGGGGAATGAAGCATCTGAAAACGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCAGGTTGAGGTTAAATCCTTTGAGTCAACAAAATTCTGTTCCTGCAGCTGCATTCTCAACTGGGAGCACGATTAGGCAGTCTGGTGTTTCTTCATCCTCTCAAGCATCACAAAGGTTTCATTCCGTTGATAATTCTCTGAACTTGAGATCAGCTCCACCAATAGATAACGTGGTTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGGCAATCGTTTAGATGGAATAGTGGTTCTAGCTCAAGAAATATCCATGCATCAAACCCAGTTATATGTGCCGACAGAGACCAAGAAGATGCAAGCTCAAGGCGAATGTCTAGAAATATTTTGGAACATCCTGTCTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAAGTATTCCAGGAAATGTCGCATCTTCATCACGGACTGGATCCAATCCAGCTACCAATCCCTCTCCTGCTTCGAATTGGGTATCTCGTCCTAATCCTCCACAACATCCACGGAGGCTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATCCTATTGGAAATCCAAGCAATGCTTATTCTTCCTTGCGTTCTGGTCTTTCAACCTCTGAACCAAGGCCATTATCATCTGGGACTGGGGCAAATCCAAGATCATCTCCATGGATGGATAGGCAAGGAGAAAGTGAATTTGGAATTCCTTATTCACTGCGTACTCTGGCTGTTGCAAGTGAAGGGAGTAGTAGACTAGTATCCGAGCTCCGCAATGTGTTGGGCATTATGCGTAGAGGTGGGAATGTGCGATTCGAGGACGTTGTGATCCTTGATCATCAGTCGTTTCTTTCTGGAATAGCCGCCGATGTTCATGATCGACACAGAGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAGCGTATTGGAAATGTGAGTACTGGATTGAGTGAGGAAGCCGTATTGAAATTATTGAAACAGAAAAAGCACTCGGTTGAAAAAGAAACTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGAGATGATATAGGAACGCTTGATTGCGGCCATGATTTCCATAGTGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCTATTTGTAAGACAACAGGCTTGGCTACATGA 2124 0.4289 MQGQRGTVGPMPETLEFDCGSTPGNSTVDQQICWNNVNPAENQIPDYILSPGDMNSPYVNSINHEWQNFSGWSLGEPSSSNTPNEINNNEQKRELGWTSTITAGALPGASLEERHLEPTNTLSLDNDNTSPMYMRNPETRLTSQNLNLNAGLADSGNDNSQHLELPNLNMSSGSSNECLPSNVGSGSFLLPSANNGFLVEGSDGRPSSLDTRRVSCKRKAVEGNNGQSSDAGSSSYNQHADGSVWHAIPTQDNAGSSSNRAVSSEQVNARLGLGMGNEASENVPDSNIAGSSESFHRNFRLRLNPLSQQNSVPAAAFSTGSTIRQSGVSSSSQASQRFHSVDNSLNLRSAPPIDNVVPQSQPLVIHVPALPRNRQSFRWNSGSSSRNIHASNPVICADRDQEDASSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSSSENLSIPGNVASSSRTGSNPATNPSPASNWVSRPNPPQHPRRLSEYVRRSLFSPGSDPIGNPSNAYSSLRSGLSTSEPRPLSSGTGANPRSSPWMDRQGESEFGIPYSLRTLAVASEGSSRLVSELRNVLGIMRRGGNVRFEDVVILDHQSFLSGIAADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEEAVLKLLKQKKHSVEKETQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSDCIKQWLMHKNLCPICKTTGLAT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03461 707 MobiDBLite consensus disorder prediction 109 130 - -
Viun9g03461 707 MobiDBLite consensus disorder prediction 149 177 - -
Viun9g03461 707 SMART ring_2 660 700 IPR001841 -
Viun9g03461 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 704 IPR013083 -
Viun9g03461 707 MobiDBLite consensus disorder prediction 496 535 - -
Viun9g03461 707 MobiDBLite consensus disorder prediction 221 240 - -
Viun9g03461 707 MobiDBLite consensus disorder prediction 376 407 - -
Viun9g03461 707 Pfam Ring finger domain 660 701 IPR001841 -
Viun9g03461 707 SUPERFAMILY RING/U-box 646 703 - -
Viun9g03461 707 MobiDBLite consensus disorder prediction 432 539 - -
Viun9g03461 707 MobiDBLite consensus disorder prediction 432 475 - -
Viun9g03461 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 195 705 IPR045191 GO:0061630
Viun9g03461 707 MobiDBLite consensus disorder prediction 199 240 - -
Viun9g03461 707 FunFam E3 ubiquitin-protein ligase MBR2 628 705 - -
Viun9g03461 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
Viun9g03461 707 MobiDBLite consensus disorder prediction 73 95 - -
Viun9g03461 707 MobiDBLite consensus disorder prediction 376 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03461 Viun-Chr9 40792693 40799874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03461 1 707 C3H Transcription Factor Family AT2G15530 32.396 3.54e-76 257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03461 9 40792693 40799874 Viun9g03461 9 40792693 40799874 ECH
Viun8g00352 8 2231656 2237428 Viun9g03461 9 40792693 40799874 PCT