Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03440 ATGGGGATGAAAAGATCTTCCTCGCCCAAGATCCTCATCTTGTTCTTCACAGTTTTCGCAGTGTCTTCGGCGTTGGACATGTCAATAGTCTCGTACGCCAGAACCACCAACGCCGACAAGACAGCACAGAGGAGCGACGAGGAGGTGAGGAGCATATACGAGGAATGGCTTGTGAAGAATGGCAAGGTGCATACCTCCCTCGACCAGAAAGAGAAGAGGTTTCAGATTTTCAAAGACAACCTCAAGTTTATCGACGAGCACAATGCTGAAAACCGGACATACAAGGTTGGACTGAACCGGTTCGCAGATCTTAGCAACGATGAATACCGGTCCAAGTACCTGAAAACCAAGATTAACCCCCTCAGGATGATGGCGAAGCCAAGTAACCGTTACGCCTGGCGTGTGGATGACAACTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCTGTGGTGAGAGTCAAAAACCAAGCAGAATGCGATGGTTGCTGGGCATTCTCAGCAATTGCCGCAGTGGAAGGGATTAACAAGATAGTAACAGGAAATCTAACTGCATTATCAGAACAAGAACTGTTGGACTGTGACAGAACAGTAAATGCAGGTTGTAGTGGCGGACTTGTGGATTACGCCTTTGAGTTCATTATAAACAACGGTGGCATTGACACCGAAGATGATTACCCCTTTCAAGGTGCTGATGGTATATGCGATCAAAATAAGCAAAATGCTAGAGCCGTTACAATTGATGGTTATGAACGTGTTCTTCCCTATGATGAGTTAGCCTTGAAAAAGGCTGTGGCAAATCAACCGGTGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAGTTATATGAATCTGGTATATTCACAGGAACATGTGGCACTTTAATCGATCATGGTGTTGCAGCTGTTGGTTACGGTACAGAAAATGGAACTGATTATTGGATCGTGAAGAATTCATGGGGTAATAAATGGGGAGAGGAAGGTTATGTAAGAATTGAACGCAACATAAAAGAAGACAGTGCAGGGAAATGCGGAATTGCGATTCTGTCATTTTATCCCATAAAGAGTGGCCAAAATCTCTCAAACCCCGTCAACTTCAGAAACCCACTGGGAATTTACAGCAGGAAGACCTATGAAATAGCAGGAAGACCAAATAAAAGAGAGTTTTAG 1173 0.4467 MGMKRSSSPKILILFFTVFAVSSALDMSIVSYARTTNADKTAQRSDEEVRSIYEEWLVKNGKVHTSLDQKEKRFQIFKDNLKFIDEHNAENRTYKVGLNRFADLSNDEYRSKYLKTKINPLRMMAKPSNRYAWRVDDNLPESVDWRKEGAVVRVKNQAECDGCWAFSAIAAVEGINKIVTGNLTALSEQELLDCDRTVNAGCSGGLVDYAFEFIINNGGIDTEDDYPFQGADGICDQNKQNARAVTIDGYERVLPYDELALKKAVANQPVSVAIEAYGKEFQLYESGIFTGTCGTLIDHGVAAVGYGTENGTDYWIVKNSWGNKWGEEGYVRIERNIKEDSAGKCGIAILSFYPIKSGQNLSNPVNFRNPLGIYSRKTYEIAGRPNKREF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03440 390 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 43 348 IPR013128 GO:0008234
Viun9g03440 390 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Viun9g03440 390 Gene3D Cysteine proteinases 21 357 - -
Viun9g03440 390 FunFam Cysteine protease 1 28 357 - -
Viun9g03440 390 SUPERFAMILY Cysteine proteinases 45 355 IPR038765 -
Viun9g03440 390 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Viun9g03440 390 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Viun9g03440 390 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Viun9g03440 390 CDD Peptidase_C1A 140 354 IPR039417 -
Viun9g03440 390 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Viun9g03440 390 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Viun9g03440 390 SMART Inhibitor_I29_2 53 109 IPR013201 -
Viun9g03440 390 SMART pept_c1 139 355 IPR000668 GO:0006508|GO:0008234
Viun9g03440 390 Pfam Papain family cysteine protease 139 355 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03440 Viun-Chr9 40629079 40632231 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03440 9 40629079 40632231 Viun3g03870 3 46067768 46070189 ECH
Viun9g03440 9 40629079 40632231 Viun9g03440 9 40629079 40632231 ECH
Viun8g00371 8 2428537 2432072 Viun9g03440 9 40629079 40632231 PCT