Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03432 ATGGCTTCGGCGAAGGACATGGATCGGATAAAAGGGCCATGGAGTCCCGAAGAGGACGAAGCCCTGCGGAGGTTGGTTCAGACTCACGGTCCCAGAAATTGGTCCCTCGTGAGCAAATCCATTCCGGGTCGATCTGGGAAATCGTGCCGGTTGCGGTGGTGCAATCAGCTCTCGCCCGAGGTTGAGCGCCGGCCTTTTACGGCGGAGGAAGACGAAATGATCATGAAGGCACACGCCAGGTTCGGGAACAAGTGGGCCACCATCGCTCGCCTCCTCAACGGCCGCACCGACAACGCCATCAAGAACCATTGGAATTCCACACTAAAGAGGAAATGCTCCGAACCTCCCTCCAACCCTCGGCCTCTGAAAAGAGTCGCCGCTGGTTCGGATAGCCCATCCGGATCCGATTTGAGCGATTCGGGTTTACCCGCTACGCCTCCGATCCCACTTTACGAAGCTGTAGCAGGGAGCGTAAGCGTGAACCTGGTGCCCTCTATCCTGGTTGCGAAATCTGCGTCTTTTTCCGCAACTGATATCGCGACGTCATTGAGTCTGTCTCTACCAGGATCCAACAATGGGCCTGGGCGTGGGCCTGGGCCTGTGGCAAAGGAGGAGCCCAGGAGTGTTGATTCGGAGCAGTTTTTGAGCGAAGAGTTGTTGAAGGTGATGCAAGATATGATACGAGTGGAAGTGTGGAATTACATGTCTGGATTGGAACGTAGAGGGGTGTTTACGCAAACGGAATGGTCGAATAGGGAGATGCAGCAAACATTGAGGGAAAGAAGTTGA 789 0.5488 MASAKDMDRIKGPWSPEEDEALRRLVQTHGPRNWSLVSKSIPGRSGKSCRLRWCNQLSPEVERRPFTAEEDEMIMKAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSEPPSNPRPLKRVAAGSDSPSGSDLSDSGLPATPPIPLYEAVAGSVSVNLVPSILVAKSASFSATDIATSLSLSLPGSNNGPGRGPGPVAKEEPRSVDSEQFLSEELLKVMQDMIRVEVWNYMSGLERRGVFTQTEWSNREMQQTLRERS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03432 262 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Viun9g03432 262 CDD SANT 65 108 IPR001005 -
Viun9g03432 262 FunFam MYB transcription factor 11 62 - -
Viun9g03432 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 112 IPR017930 -
Viun9g03432 262 PANTHER MYB PROTEIN-RELATED 11 135 - -
Viun9g03432 262 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Viun9g03432 262 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Viun9g03432 262 FunFam Transcription factor MYB44 65 111 - -
Viun9g03432 262 MobiDBLite consensus disorder prediction 107 143 - -
Viun9g03432 262 Pfam Myb-like DNA-binding domain 14 72 - -
Viun9g03432 262 CDD SANT 13 55 IPR001005 -
Viun9g03432 262 Gene3D - 64 127 - -
Viun9g03432 262 MobiDBLite consensus disorder prediction 184 208 - -
Viun9g03432 262 Gene3D - 10 62 - -
Viun9g03432 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Viun9g03432 262 SMART sant 62 110 IPR001005 -
Viun9g03432 262 SMART sant 10 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03432 Viun-Chr9 40558502 40559578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03432 5 243 MYB Transcription Factor Family AT4G37260 49.117 8.72e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun9g03432 Myb_DNA-bind_6 1.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03432 9 40558502 40559578 Viun2g02153 2 29511140 29513195 ECH
Viun9g03432 9 40558502 40559578 Viun3g03877 3 46183431 46184894 ECH
Viun9g03432 9 40558502 40559578 Viun9g03432 9 40558502 40559578 ECH
Viun8g00381 8 2536665 2538461 Viun9g03432 9 40558502 40559578 PCT