Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03395 ATGGCTCTCCAAGCTCTTCAATCACCCACCACCGCTAACCCATCGTTTAGTCCCTTCGAAGAACCCAATCACACGCCTTGGGCAAAGGGAAAGCGTTCTAAGCGTCCCCGGATGGACCAACAACATCCTTCCTGCACGGAAGAGGAGTATCTAGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGTTCTCCTGCTGCCGCCGCTGCCATCCCCACCGCCTCCAAGCCTGCTCTCTCGGACAACAACCCCGCCAAACTCACCTACAAATGCTCCGTCTGCAACAAGGCCTTCTCCTCTTACCAAGCCCTCGGCGGGCACAAGGCCAGCCACCGCAAATTAGCTGGCGCCGCCGAAGACCAGCCCACCTCCTCCAGCGTCACCACCACTTCTGCCTCCAACGGCGGAGGTAGGACCCACGAGTGCTCCATATGCCACAAAACTTTCCCGACAGGACAGGCCTTGGGAGGACACAAACGATGTCACTACGAAGGCAGCGGCGGTGGTAACGGTGGTAACAGCGCCGTAACCGCCTCCGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGACTTCGATCTGAACCTGCCGGCTTTTCCGGACTTTCCAACGAGGTTCTTGGCTGAAGAAGAGGTTTCCAGCCCCCACCCATCGAAGAAGCCCCGTCTGAATTTGACCATCCCGAAGATTGAAATCCCTCGGTGTTAA 708 0.5833 MALQALQSPTTANPSFSPFEEPNHTPWAKGKRSKRPRMDQQHPSCTEEEYLALCLIMLARGGSPAAAAAIPTASKPALSDNNPAKLTYKCSVCNKAFSSYQALGGHKASHRKLAGAAEDQPTSSSVTTTSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGSGGGNGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFLAEEEVSSPHPSKKPRLNLTIPKIEIPRC 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03395 235 MobiDBLite consensus disorder prediction 118 137 - -
Viun9g03395 235 MobiDBLite consensus disorder prediction 1 20 - -
Viun9g03395 235 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 198 IPR044653 GO:0003700
Viun9g03395 235 MobiDBLite consensus disorder prediction 166 192 - -
Viun9g03395 235 MobiDBLite consensus disorder prediction 25 43 - -
Viun9g03395 235 SMART c2h2final6 88 110 IPR013087 -
Viun9g03395 235 SMART c2h2final6 139 161 IPR013087 -
Viun9g03395 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Viun9g03395 235 MobiDBLite consensus disorder prediction 169 190 - -
Viun9g03395 235 SUPERFAMILY beta-beta-alpha zinc fingers 87 161 IPR036236 -
Viun9g03395 235 MobiDBLite consensus disorder prediction 111 138 - -
Viun9g03395 235 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Viun9g03395 235 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Viun9g03395 235 Gene3D Classic Zinc Finger 86 161 - -
Viun9g03395 235 MobiDBLite consensus disorder prediction 1 43 - -
Viun9g03395 235 Pfam C2H2-type zinc finger 139 162 - -
Viun9g03395 235 Pfam C2H2-type zinc finger 88 112 - -
Viun9g03395 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03395 Viun-Chr9 40369735 40370869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03395 1 232 C2H2 Transcription Factor Family AT1G27730 49.590 5.52e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun9g03395 zf-C2H2_6 2.2e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03395 9 40369735 40370869 Viun9g03395 9 40369735 40370869 ECH
Viun8g00399 8 2699388 2700436 Viun9g03395 9 40369735 40370869 PCT