LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03371	ATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTAACTGCGGATAATCGAGTCTTCCACAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTCGAGGGAGTTCTTTACTGCAAGCCACACTTCGATCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGACAAAACTGGCGAAGAGAAACCGGCAGCAACCAAAGTCTTGAATATGTTTGGTGGAACCAGAGATAAATGTGCTGGTTGTCAGAAAACAGTGTATCCCACTGAAAAGGTGACGGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCCAATTACATTGCACACGATGGGAAACTCTACTGCAAGCACCACCACATCCAACTGATCAAGGAGAAGGGAAATTTAAGCCAGCTTGAAGGTGACCATGAGAAGAGTGCAATTCAAGAGAAAACCAACGGTGAAGTAGTTGCAGCTGAGACATGA	591	0.4365	MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPDKTGEEKPAATKVLNMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHDGKLYCKHHHIQLIKEKGNLSQLEGDHEKSAIQEKTNGEVVAAET	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03371	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	101	134	-	-
	Viun9g03371	196	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Viun9g03371	196	Gene3D	Cysteine Rich Protein	104	173	-	-
	Viun9g03371	196	Gene3D	Cysteine Rich Protein	4	74	-	-
	Viun9g03371	196	PANTHER	OS06G0237300 PROTEIN	4	93	-	-
	Viun9g03371	196	SMART	lim_4	9	61	IPR001781	-
	Viun9g03371	196	SMART	lim_4	108	160	IPR001781	-
	Viun9g03371	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Viun9g03371	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Viun9g03371	196	FunFam	LIM domain and actin-binding 1	103	173	-	-
	Viun9g03371	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	135	174	-	-
	Viun9g03371	196	CDD	LIM1_SF3	6	68	-	-
	Viun9g03371	196	Pfam	LIM domain	109	163	IPR001781	-
	Viun9g03371	196	Pfam	LIM domain	10	64	IPR001781	-
	Viun9g03371	196	CDD	LIM2_SF3	109	169	-	-
	Viun9g03371	196	ProSiteProfiles	LIM domain profile.	107	167	IPR001781	-
	Viun9g03371	196	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Viun9g03371	196	FunFam	LIM domain and actin-binding 1	4	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03371	Viun-Chr9	40265647	40267708	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Viun9g03371		LIM	2.6e-13	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun9g03371	9	40265647	40267708	Viun9g03371	9	40265647	40267708	ECH
	Viun8g00415	8	2831856	2833661	Viun9g03371	9	40265647	40267708	PCT