Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02129 ATGGACACAGCTCAGTGGGCACAGGGTATTGGAGTGGTTAAACCTATGGAAGGTTCAAAGCCTCCTCCTATGTTGGAGAGAAGGGCGAGGCCCCAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCCACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCACAGCCAAGGTACTTTTGCAAAACATGTAGAAGGTATTGGACCGAGGGTGGTTCTCTCAGAAACGTTCCTGTGGGTGGTGGCTCTAGGAAGAACAAGAGATCAACCCCATCAGCTCCATCACCGGCATCAGCACCAACATCAAAGAAGCTTCCTGATCTCACACCACCAAATTTCCCTCAATCTGCTTCTCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACTTGGCATACCCTCCAGCCGAGGACTACAACACTGTGTCTAAGTTCATCGAGGTTCCTTACAGCACGGAATTAGACAAGGGTAGTCTTCAAAACGCCACTTCCTCATCAACACCGTCTCAGTTGTCTGCCATGGAGCTTCTCAAGACTGGGATTGCTTCCTCCAGGGGTTTAAACTCCTTCATGCCAATGTATAATTCAACTGGGTTTCCTTTGCCAGACTTCAAGCCACCACCTGGCCTTAACTTCAGTCTAGAGGGGTTTGAAAATGGTTACGGGGGTCTTCAGGGAATTCAAGAGGGTCCTACTGGTGCAAGGATCTTGTTTCCTGTGGAGGATTTGAAGCAGCAGGTTCCAACCACCAATGAGTTCGATCAGCAGAATAGGAGTCAAGGGGATTCATCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCGTGGTAG 840 0.4881 MDTAQWAQGIGVVKPMEGSKPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSAPSPASAPTSKKLPDLTPPNFPQSASQDPKIHQGQDLNLAYPPAEDYNTVSKFIEVPYSTELDKGSLQNATSSSTPSQLSAMELLKTGIASSRGLNSFMPMYNSTGFPLPDFKPPPGLNFSLEGFENGYGGLQGIQEGPTGARILFPVEDLKQQVPTTNEFDQQNRSQGDSSGYWNGMLGGGSW 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02129 279 Pfam Dof domain, zinc finger 34 91 IPR003851 GO:0003677|GO:0006355
Viun9g02129 279 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Viun9g02129 279 MobiDBLite consensus disorder prediction 111 126 - -
Viun9g02129 279 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Viun9g02129 279 MobiDBLite consensus disorder prediction 1 33 - -
Viun9g02129 279 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 169 IPR045174 GO:0003700|GO:0006355
Viun9g02129 279 MobiDBLite consensus disorder prediction 253 269 - -
Viun9g02129 279 MobiDBLite consensus disorder prediction 78 126 - -
Viun9g02129 279 MobiDBLite consensus disorder prediction 86 102 - -
Viun9g02129 279 MobiDBLite consensus disorder prediction 253 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02129 Viun-Chr9 31016985 31018844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02129 24 279 C2C2-Dof Transcription Factor Family AT3G61850 45.196 2.05e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun9g02129 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02129 - - gmx:778114 482.256