Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01215 ATGGGGTTATCTTCTTTGCACGTCTGCATGGATTCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCCTCTTCACCCTCTGGGGACATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGCCCCAGGTGTGACTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACCTGCAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTTGGTGGAGGGTGCAGAAAGAACAAGAAAGTCTCTGCCAAAAAATCCAACGACCACCAATTAGTCAACAATCAAATTAGTCAAACACAGCCCCCACCCTCCTCCTACCATCACAACCCCAAAGACCTTCAACTCTCTTTTCCAGATGTACAATTTTCCCACCTCAGCAACCTGCTTGGGACACATAATGCAGGGGCACTGGGAGGAAACCCTAGCTTCATGGAGGGCAAGTATGGTATTGGCATGATCGAGAACCCTAGGCCAATTGACTTCATGATGGAGAGCAAGTTGGAGGGCATAATTGGGAGTAGTAGTTCTAGGAATTTTGATTTTTTTGGAAATACTGACATGGCTATGGGTGGTGCTGGGCTAGGAGATATGCATGGTAATGCTCAAAATGGGTTGCCACCAAATTTTCACGCTCTTTGTCCCTCAGCTTTTGGTGGCATGTCTATGTCCCTTGATGCCAACACCACTACCAATGGTGCTGCTAATAACTACTTAATGGACTCTTGCCAACGCTTGATGCTGCCATATGATGCCACTGAGGACCATAATGCCTCAATTGATGTGAAGCCAAACCCTAAACAGCTATTGTCCCTCGAATGGCAAGACCAGGGTTGCTCTGATGCAGGCAAAGACTCATTCGGGTATCTCAACGGTCCAGGATCATGGACCGGCATGATGAACGGCTATGGATCTTCCACCACAAACCCTTTGGTCTAA 1029 0.4791 MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHQLVNNQISQTQPPPSSYHHNPKDLQLSFPDVQFSHLSNLLGTHNAGALGGNPSFMEGKYGIGMIENPRPIDFMMESKLEGIIGSSSSRNFDFFGNTDMAMGGAGLGDMHGNAQNGLPPNFHALCPSAFGGMSMSLDANTTTNGAANNYLMDSCQRLMLPYDATEDHNASIDVKPNPKQLLSLEWQDQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTNPLV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01215 342 Pfam Dof domain, zinc finger 54 111 IPR003851 GO:0003677|GO:0006355
Viun9g01215 342 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Viun9g01215 342 MobiDBLite consensus disorder prediction 108 139 - -
Viun9g01215 342 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Viun9g01215 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 204 IPR045174 GO:0003700|GO:0006355
Viun9g01215 342 MobiDBLite consensus disorder prediction 118 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01215 Viun-Chr9 11447429 11449507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01215 1 342 C2C2-Dof Transcription Factor Family AT5G62940 40.458 3.21e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun9g01215 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01215 - - gmx:778107 573.933