Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01062 ATGCTCGAAAATAAGGACCCTGAAATTAGGCTCTTCGGTCAGAAGATTGCCTTTTCCGGAGAACCCGACGCTCCAACCATTGCCGCCGCTGACACCGCCTCGCCGCCGTCGCCGGTGGATGTTGTCAGAGATGCAGAAGGGGAAGGAGAAGAAGAAGTAGATGACGACGTTGCTGACTCAGAGGCTGAAGATGATGAGAACAAAGACAAGGATCCTGCAGAAGAAGTTAGTGAGAAAACGAAAGAAGCTGATCTTCCTCCAAATGCTGCAGACTCTAAGAACACCCCAGAGGGTATTCAGAATCCAAACACACCTTCCATTGACGAAGAATCTGCAAAGTCAAAATCCAACAAGTCAGAAAACGATCCAACCACAACAGTTGCTGCTACTGCAACCAACAACTCACAAGACAACAACAATAAAACGCTGAAAAAACCAGACAAAATTCTTCCATGTCCTCGCTGCAATAGCATGGACACCAAGTTCTGTTACTACAACAACTACAATGTGAACCAGCCACGTTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCCGGGGGCACCATGCGAAACGTGCCGGTGGGTGCAGGGAGGAGAAAGAACAAAAACTCAGCCTCTCACTATCGCCATATCACAATCTCTGAAGCACTTCAAGCTGCGAGAATCGATTCCCCAAACGGAACTCATCTTTTGAAGCCCAATGGGAAAGTCCTCAGCTTTGGTTTAGACCCTCCAATTTGCGATTCCATGGCATCAGTCCTCAACCTCGCAGAGAAGAAAACAAGAAACGCGTTTCAGTCCATGGAGGATCAAAGAAACAAAGACGATGACCGCTCAAGTGGATCATCCATCACCGTTTCCAATGAAGAAAGTGGGAAAAGCACGTCACAAGAATCACTGGTCCCTAACAACAACAACAACGGTTTCATACATCATCATCATCACCATGTTCCGTGCATCTCCACTGTTCCTTGGGCTTATCCTTGGAACTCCGGGGTTCCCTCAGCACCTGCTCTGTGCCCTCCTGGGTTTCCCATGTCATTCTACCCTCATGCATTTTGGAACATTCCATGGTTTCCCACACACCATGCTGCACCAGCTCCAAGATCTCCGGGTTCCGGTCCAAATTCTCCCACTCTTGGGAAACACTCGAGGGACGATGACTTGGCGAAGCAAGAGCACGTCCACGAAGAACCCTCGAGGCAGAGAAACGGGTCTGTTTTGGTGCCCAAAACTTTGAGAATCGATGACCCCAGTGAGGCAGCCAAGAGTTCTATATGGGCAACTTTAGGGATCAAGAACGAGTGTGTGAGTGGGGGTGGCATGTTCAAAGGGTTCCAATCAAAGAAAGATGAGAAAGAGCGTGTGGTTGAAACCTCTCCTGTGTTGAGGGCCAACCCTGCAGCCTTGTCTAGATCCCTTAACTTTCACGAGAACTCTTGA 1446 0.4896 MLENKDPEIRLFGQKIAFSGEPDAPTIAAADTASPPSPVDVVRDAEGEGEEEVDDDVADSEAEDDENKDKDPAEEVSEKTKEADLPPNAADSKNTPEGIQNPNTPSIDEESAKSKSNKSENDPTTTVAATATNNSQDNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDSPNGTHLLKPNGKVLSFGLDPPICDSMASVLNLAEKKTRNAFQSMEDQRNKDDDRSSGSSITVSNEESGKSTSQESLVPNNNNNGFIHHHHHHVPCISTVPWAYPWNSGVPSAPALCPPGFPMSFYPHAFWNIPWFPTHHAAPAPRSPGSGPNSPTLGKHSRDDDLAKQEHVHEEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKGFQSKKDEKERVVETSPVLRANPAALSRSLNFHENS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01062 481 MobiDBLite consensus disorder prediction 45 71 - -
Viun9g01062 481 ProSitePatterns Zinc finger Dof-type signature. 152 188 IPR003851 GO:0003677|GO:0006355
Viun9g01062 481 PANTHER CYCLIC DOF FACTOR 2 4 481 IPR045174 GO:0003700|GO:0006355
Viun9g01062 481 MobiDBLite consensus disorder prediction 382 402 - -
Viun9g01062 481 MobiDBLite consensus disorder prediction 118 140 - -
Viun9g01062 481 MobiDBLite consensus disorder prediction 366 413 - -
Viun9g01062 481 ProSiteProfiles Zinc finger Dof-type profile. 150 204 IPR003851 GO:0003677|GO:0006355
Viun9g01062 481 Pfam Dof domain, zinc finger 147 204 IPR003851 GO:0003677|GO:0006355
Viun9g01062 481 MobiDBLite consensus disorder prediction 281 308 - -
Viun9g01062 481 MobiDBLite consensus disorder prediction 267 308 - -
Viun9g01062 481 MobiDBLite consensus disorder prediction 22 148 - -
Viun9g01062 481 MobiDBLite consensus disorder prediction 93 110 - -
Viun9g01062 481 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01062 Viun-Chr9 8480091 8483332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01062 1 479 C2C2-Dof Transcription Factor Family AT3G47500 46.774 1.11e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun9g01062 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01062 - - gsj:114409713 682.174