Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00858 ATGCAATCTCAAACTTCGGATACGTTTCCCTCTCACTGTGAAAACGAACCAATTTCCTGCTATGACCCAGCATTTTACTACACCAGACCCTTTTCCATTGACTCTGAAAGCAACCCAACGTCCAAACAAGAAAACAACCCTCACCTTCCTCCTTTGTCCTTTTTCCACTTTCCTTCTCCTCCTCCCTTTGAAGACTCTCAAATTTTCCTCGAACAACACCACGATTTCCTCCTTCAGTTTCACCATAAACCCCCCGAGCCTGAACCAGTTAATCTTGCCGCGGAGACTTCTGTTAAGAAGAATACTCAAACCCCCAGAAAAAGGCCTGCCAAGAGAGACAGACACAGCAAGATCAGCACCGCGAGAGGACTCAGGGATAGGAGAATGAGACTTTCCCTTGATGTTGCAAAGAGGTTTTTCGGTTTGCAAGATATGCTAGGCTTTGACAAAGCTAGCAAGACCGTGGAGTGGTTACTGAACCAAGCAAAAGCTGAAATCCATCGTCTGGCGAAGGAGAAAAAGAAGCAGAAGAAGAGTGTTCACCGCAGCTGCAGCAGTGCTGGTTCGGAATGTGAAGAAGGTGTGTCTAGTCTTGATGAGGTTGCAGTGAGTAGAGATGAAAAAGAAGCAGAAGAGAGAGTGGACAAAGCGATGAAGAGAAGGGTTAAGCATTCTAGGAAGATCAGTGCTTTCCACCCTCTTGCAAGGGAGTGCAGAGAAAGGGCAAGAGAGAGGGCAAGAGAGAGGACAAGACAAAAGATGAGAAGTCGTGGCCTGGCTGAAGAATCAAAGCCATGTAGAGAGGAAGCAAATCAAAATCTGATCCAATTGGGTTCTTGGAAACCCTCAGAAACTGCAGAAGAATTTGGTAGCAAGAGCCATAGTGTTCATCCTTCCTTGGACGTGATCACTGAGGGTAAAGAACATGGCTACTACTACACAAAGGAGCATGATGATGATGATTCTTTGGTTATCTTGAGCAAATGGAGCCCCTCCTTGATCTTCAATAACTATGGATTCTCTCACGACCACCAATTTGCAGAATTTCAGTCCTTGGGAAAGCCATGGGAGACCTAG 1077 0.4596 MQSQTSDTFPSHCENEPISCYDPAFYYTRPFSIDSESNPTSKQENNPHLPPLSFFHFPSPPPFEDSQIFLEQHHDFLLQFHHKPPEPEPVNLAAETSVKKNTQTPRKRPAKRDRHSKISTARGLRDRRMRLSLDVAKRFFGLQDMLGFDKASKTVEWLLNQAKAEIHRLAKEKKKQKKSVHRSCSSAGSECEEGVSSLDEVAVSRDEKEAEERVDKAMKRRVKHSRKISAFHPLARECRERARERARERTRQKMRSRGLAEESKPCREEANQNLIQLGSWKPSETAEEFGSKSHSVHPSLDVITEGKEHGYYYTKEHDDDDSLVILSKWSPSLIFNNYGFSHDHQFAEFQSLGKPWET 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00858 358 MobiDBLite consensus disorder prediction 245 268 - -
Viun9g00858 358 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 87 357 IPR005333 GO:0003700
Viun9g00858 358 MobiDBLite consensus disorder prediction 83 124 - -
Viun9g00858 358 Pfam TCP family transcription factor 110 256 IPR017887 -
Viun9g00858 358 MobiDBLite consensus disorder prediction 199 218 - -
Viun9g00858 358 Coils Coil 159 179 - -
Viun9g00858 358 ProSiteProfiles TCP domain profile. 111 169 IPR017887 -
Viun9g00858 358 Coils Coil 207 227 - -
Viun9g00858 358 MobiDBLite consensus disorder prediction 195 221 - -
Viun9g00858 358 ProSiteProfiles R domain profile. 236 253 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00858 Viun-Chr9 6485287 6487241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00858 39 250 TCP Transcription Factor Family AT3G18550 39.506 1.82e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun9g00858 TCP 5.4e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00858 9 6485287 6487241 Viun9g00858 9 6485287 6487241 ECH
Viun9g00858 9 6485287 6487241 Viun3g04747 3 54901668 54903743 ECH
Viun9g00858 9 6485287 6487241 Viun5g00309 5 1825078 1826983 ECH