Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00841 ATGTATTGCACATCCCTCTTTCAATGTTGTTTTGTTGATTACATTGAGAACAACATGTCAAAACTTAAGGTTAATCAACTTCGCCAATTAAGGAACATTTTTGAAAAATTTGACACAGATTCCGATGGTAGCCTAACAAATCTAGAGCTAGCCGCGCTCCTTCGGTCATTAGGGCTAAAGCCTTCGAGTGACCAAATCCATGTGTTATTGACGAACCTGGATTCAAATGGAAATGGATTTGTGGAGTTTGATGAGTTGGTGGATGCAATATTGCGTAACATAAGTGCAGAGATATTATTGAACCAAGAAATGCTTCTTGGGGTATTTAAATATTTTGATCGTGACGGAAATGGTTTCATAACAGCCGCAGAGCTAGCAGGGGCAATGGCGAAATTAGGTCAACCCCTTACCTATAGAGAGCTCAGAGAGATGATCACAGAAGCAGATACAGATGGGGATGGTGTCATTAGCTTCAATGAATTTGTCACTGTCATGGGTAGATCAGCTTCTGACTTCTTAGACTTTGCACTGTTGTAA 537 0.4022 MYCTSLFQCCFVDYIENNMSKLKVNQLRQLRNIFEKFDTDSDGSLTNLELAALLRSLGLKPSSDQIHVLLTNLDSNGNGFVEFDELVDAILRNISAEILLNQEMLLGVFKYFDRDGNGFITAAELAGAMAKLGQPLTYRELREMITEADTDGDGVISFNEFVTVMGRSASDFLDFALL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00841 178 ProSitePatterns EF-hand calcium-binding domain. 113 125 IPR018247 -
Viun9g00841 178 SMART efh_1 65 93 IPR002048 GO:0005509
Viun9g00841 178 SMART efh_1 29 57 IPR002048 GO:0005509
Viun9g00841 178 SMART efh_1 104 132 IPR002048 GO:0005509
Viun9g00841 178 SMART efh_1 140 168 IPR002048 GO:0005509
Viun9g00841 178 ProSitePatterns EF-hand calcium-binding domain. 74 86 IPR018247 -
Viun9g00841 178 Gene3D - 7 95 - -
Viun9g00841 178 Pfam EF-hand domain pair 28 89 IPR002048 GO:0005509
Viun9g00841 178 Pfam EF-hand domain pair 105 165 IPR002048 GO:0005509
Viun9g00841 178 FunFam Probable calcium-binding protein CML15 15 95 - -
Viun9g00841 178 ProSiteProfiles EF-hand calcium-binding domain profile. 25 60 IPR002048 GO:0005509
Viun9g00841 178 ProSiteProfiles EF-hand calcium-binding domain profile. 136 171 IPR002048 GO:0005509
Viun9g00841 178 ProSiteProfiles EF-hand calcium-binding domain profile. 61 96 IPR002048 GO:0005509
Viun9g00841 178 Gene3D - 96 177 - -
Viun9g00841 178 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Viun9g00841 178 SUPERFAMILY EF-hand 19 165 IPR011992 -
Viun9g00841 178 CDD EFh 104 165 IPR002048 GO:0005509
Viun9g00841 178 ProSitePatterns EF-hand calcium-binding domain. 149 161 IPR018247 -
Viun9g00841 178 ProSitePatterns EF-hand calcium-binding domain. 38 50 IPR018247 -
Viun9g00841 178 PANTHER CALCIUM BINDING PROTEIN 102 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00841 Viun-Chr9 6331983 6332984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00841 25 172 EF-hand Containing Proteins AT1G18530 72.297 2.79e-77 226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00841 9 6331983 6332984 Viun9g00841 9 6331983 6332984 ECH