Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00805 ATGGAAGATAGCGATACGAGACGAGCAGTGCAGTGCTCTGCAGGGATATTTGTCAGTCCAAACACTCTTTCTTTCTCTTCTTCTCTTTCACACTATTCCCCATACCTTCTTCACAAACTGACACACCTTCTCCCAAAACATAGTACACTCTCACACAAACAAAACAATCTCTCTTTTCTTTCTTTCCTTCTCCACCACACCGCAAACAACTATTTCCAAAATTTCACCTTCCATTTCTGGCCGGAAATGCAGGATATACATTCCATCTGCGGCGGCGACCGCAGGCTCAGACAGCACCACCACCACCACCACCAGCCGCTCAAGTGCCCTCGCTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCACGCCATTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTTCGCAATGTCCCCGTCGGCGGTGGCTGCCGCAAGTCCAAACGCTCCAACAAACCCAAAACTACTACCGCCACCACCACCAACAACAACAACAATCCTTCCTCTTCCTCGCAGATCGCTCCGGCAACCGCGTCCACCACGCCGTCGGCTGCGGAGCCGGAGCGCAACTCGAACTCCCACTCTAGCAGCGAAAGCTCCACGCTCACCGTCACGGAGGCGATGTCGGCGCCGACATCAAACACGTTGTCCAGCAACGCTTTGTTCCTGGACAACGTTCGCGAGTCGAAGTTGTTTAACGCTAGTAACCCCTCTTTGGATGGCGGTGCCGTTTTCTCTGAGATAGGAAACTTCTCTAGCCTCATTGCTTCAAATAACGAAGCATTGGGGTTTGGGTTTGGGAATTGCAGTAATAACAACAGCAACGGCAACAGCAACATCCTCGATGCGACGCCGTTTCGGTTCGGTGTTACTCATCCGCAGGGGAATAATAATGATCAGGTGCAAGGAGCAGCAGGTGGAGAGCAACAGCAGAATCATCAGGAGTTCGGTACGGCGTCGTTTCTCGATCTGACGGCGCCGCTGGAGTTTTCCTCGTTGCCGCAGAAGAGTGGTGGTCATCATCATGGAGGGTTTGGATCGTTGGATTGGCAACCCGGTGCGGATCAAGGTTTGTTCGATCTTCCTAACACCGTTGATCAACCGTACTGGACCCACAGTCATTGGTCTGATCAAGATAATCCCTCTCTCTTTCACCTTCCTTGA 1200 0.5225 MEDSDTRRAVQCSAGIFVSPNTLSFSSSLSHYSPYLLHKLTHLLPKHSTLSHKQNNLSFLSFLLHHTANNYFQNFTFHFWPEMQDIHSICGGDRRLRQHHHHHHQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTTTATTTNNNNNPSSSSQIAPATASTTPSAAEPERNSNSHSSSESSTLTVTEAMSAPTSNTLSSNALFLDNVRESKLFNASNPSLDGGAVFSEIGNFSSLIASNNEALGFGFGNCSNNNSNGNSNILDATPFRFGVTHPQGNNNDQVQGAAGGEQQQNHQEFGTASFLDLTAPLEFSSLPQKSGGHHHGGFGSLDWQPGADQGLFDLPNTVDQPYWTHSHWSDQDNPSLFHLP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00805 399 Pfam Dof domain, zinc finger 105 161 IPR003851 GO:0003677|GO:0006355
Viun9g00805 399 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Viun9g00805 399 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 97 306 IPR045174 GO:0003700|GO:0006355
Viun9g00805 399 MobiDBLite consensus disorder prediction 152 223 - -
Viun9g00805 399 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Viun9g00805 399 MobiDBLite consensus disorder prediction 165 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00805 Viun-Chr9 6029173 6030800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00805 93 399 C2C2-Dof Transcription Factor Family AT5G60850 38.110 9.55e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun9g00805 zf-Dof 6.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00805 - - vun:114196340 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00805 9 6029173 6030800 Viun9g00805 9 6029173 6030800 ECH
Viun3g04693 3 54314947 54316530 Viun9g00805 9 6029173 6030800 PCT