Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00242 ATGGCAACAAAATCCTTAGCCTGCTCCTTGCTTTTGGGGATGGCTTGTTCCATAGTAATTGGTGCATATGAAGAGAGCTTGTATCCTAGGACTATTTCCAGTGACAATTATCATGAAGCAATACAACGTTTGCAGTCATTTAAGTCCTCTCTAACTACACGTGATTCCATTGCTTCTGCACCATCTTCCTCATCATCCTTCTCAACCCTTTCTGCTCCTGCTCCTGCTCCTTCTCCTCTCTCACTTCAGGGAGTGAACTATCCACGTGTGTACCATGTAACATCTTATGGTGCAGACCCAACGGGTAGTTCAGATAGCACCGAAGCACTCCTTGCAGCCATAGAAGATGCAGCCAAGGGTCCCAGTGAAGGATATTTGATGCAAGGCATCAAAAACCTTGGAGGTTCCCGGATTAATCTCGAGGGTGGAAATTACTTGATCAGCCAGCCACTGCGGTTGCCGGTGGCCGGAGTGGGGAACCTTATGATACATGGGGGCACGATAAGAGCCTCAGATGGTTTTCCAGCAGATGGCTATATCATTGATTTGTCACCCTCTTCCAATGAAGGAAACACAGAGAGTTCTTCACATTCCTACAATTTTGAGTACATAACTCTCAAAGACCTCTTGTTGGATTCAAACTTCAGGGGAGGAGGCATTTCAGTCATAAACTCACTTCGGATTAGCATAGACAATTGTTACATCACACATTTCACCACCAATGGAATCTTAGTCCAAAGTGGCCATGAAACCTACATCAGAAACAGTTTCCTTGGTCAGCACATAACTGCTGGTGGGGACAAAAACGAAAGAAACTTCTCAGGCACAGGAATAAACCTCCAGGGTAATGACAATGCTGTCACAGATGTTGTAATTTTCTCTGCTGCTATAGGAATAATGGTTACTGGTCAAGCCAATGCCTTTTCTGGTGTACATTGTTACAACAAGGCCACTGGCTTTGGAGGCACGGGGATTTATTTGAAACTACCTGGATTAACACAAACTAGAATTGTGAATTCTTACATGGATTACACGAATATTGTGGCTGAAGACCCTGTTCAGTTCCATGTTTCTAGTTCTTTTTTCCTCGGTGATGGCAACATTGTCCTAAAGTCTAAGAATGGGGTTATAAAAGGTGTTGATATTGTTGATAACATGTTCTCAGGTTCAGATCATGGCGTTGAAATTGTTCAGCTGGACCAATCCAATAATCCTTTCCATCAAATTGAACAAGTTACTGTTGACAGAAACAATGCAAGAAGGATGAAGTTGAAGGCCACAGTTGCAAAAGGGTCCATGCAAGGGAATGGAACCTCATGGACCGTTGATTTTAACAATGTTTTGCTTTTTCCTAACCTTATAAAACATGTTCAGTACTCTCTAAGCACCCCTGGCAGCACCTTCCCGAATCATATTCTAAGGAATGTGTCTGAGAATCGTGTTGTGATTGAAACAAACGAAGCAGTTCCTGCCAGTGTTTTTGTTACGGTGGATCAAAGTGAGACAAGTTGA 1512 0.4312 MATKSLACSLLLGMACSIVIGAYEESLYPRTISSDNYHEAIQRLQSFKSSLTTRDSIASAPSSSSSFSTLSAPAPAPSPLSLQGVNYPRVYHVTSYGADPTGSSDSTEALLAAIEDAAKGPSEGYLMQGIKNLGGSRINLEGGNYLISQPLRLPVAGVGNLMIHGGTIRASDGFPADGYIIDLSPSSNEGNTESSSHSYNFEYITLKDLLLDSNFRGGGISVINSLRISIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERNFSGTGINLQGNDNAVTDVVIFSAAIGIMVTGQANAFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTNIVAEDPVQFHVSSSFFLGDGNIVLKSKNGVIKGVDIVDNMFSGSDHGVEIVQLDQSNNPFHQIEQVTVDRNNARRMKLKATVAKGSMQGNGTSWTVDFNNVLLFPNLIKHVQYSLSTPGSTFPNHILRNVSENRVVIETNEAVPASVFVTVDQSETS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00242 503 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Viun9g00242 503 SUPERFAMILY Pectin lyase-like 89 470 IPR011050 -
Viun9g00242 503 FunFam Polygalacturonase QRT3 93 494 - -
Viun9g00242 503 SMART pbh1 372 398 IPR006626 -
Viun9g00242 503 SMART pbh1 282 303 IPR006626 -
Viun9g00242 503 SMART pbh1 225 247 IPR006626 -
Viun9g00242 503 SMART pbh1 158 183 IPR006626 -
Viun9g00242 503 Gene3D - 90 500 IPR012334 -
Viun9g00242 503 PANTHER POLYGALACTURONASE QRT3 31 501 IPR039279 GO:0004650
Viun9g00242 503 Pfam Pectate lyase superfamily protein 93 319 IPR024535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00242 Viun-Chr9 1551729 1555453 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00242 9 1551729 1555453 Viun9g00242 9 1551729 1555453 ECH