Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01352 ATGACAAATCAACACCCCATTTTGCATTTGTTTCTCTTGTACGTTCTTCTCAATGCAGCTCGTACGAGTTGCAAATCCACCATTGAGCCATGCTCTGATACTAACTCGTGCAATGCTCTTCTTGGCTACACCCTTTACACTGATCTCAAGGTGTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATTGATCTTCTCACTGCCAATGCCTTTGACATCTCCTACTCTGATGTAGACCATCACATTCTCCCTTCCAAACTCTTCCTCAAGGTTCCTATCACATGTTTCTGTGCTGATGGGATTAGAAGATCAGTGTCTACCCATTACAGGACTCGTCTTTCTGATACTCTCTCTTCCATTGCAGATTCAGTGTATGGAGGTCTGGTGTCTCCTGATCAGCTTAGGGAGGCTAATTCCATAGCTGACCCTTCGCTGCTTGATGTGGGCCACAACCTTGTGGTGCCACTTCCATGCACATGCTTCAATGGCAGTGATAATTCTTTGCCTTCTATTTACCTCTCCTATGTTGTAAAGCCAATGGATACTTTGGCTGCCATTGCAGCTAGGTATTTCACCACACTTACTGATTTGATGAATGTTAATGACATGGGGAGTGCAGTTATCTCTGATGGAGATATTCTCGCTGTTCCAATTCCTGCTTGTGCATCAAATTTTCCAAAACATGCCACTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTATACCATTACAGCTAGTCACTGTGTGCAGTGTAGCTGTGGACCACAAAATTTAGATTTATATTGTATTCCCTCTTCTCTAGCCGTCTCTTGCTCCAGCATGCAATGCAAAAGAAGCAATCTTACACTTGGGAATGTAACCGTGCAACATATGAGCTCAGGTTGTAATGTGACATCGTGCAATTATGATGGTTTTGTCCATGGCAACATATTAACAATGATGGCCTCATCTCTTCAGTCTCATTGTCCAGACCAACAACGATTCCCTCCACTTAGAGCGCCACCTTCATCTGTTGCAAGGGAATCAGTTGTTGCATACGCTCCATCTGTGTCACCATCACAGCCACCATTACCGTCACAGTCACCATCATCGGCATCAGAAGGAACAGGTCTAACAGCACCCAAATCTTCAGTCATGCCTGCAACCAGATCATTTCCAGTATTCTCACCTGCAAATGGCCATGTTGGTAGGATTTCTTCTGCTGCTCCCTCTTTGGTGAATCATATTCCCATTTTGTTGCCCTCATTTATGTTGTTGCTTATAACGTTGATGTAA 1275 0.4408 MTNQHPILHLFLLYVLLNAARTSCKSTIEPCSDTNSCNALLGYTLYTDLKVSEVASLFQIDPIDLLTANAFDISYSDVDHHILPSKLFLKVPITCFCADGIRRSVSTHYRTRLSDTLSSIADSVYGGLVSPDQLREANSIADPSLLDVGHNLVVPLPCTCFNGSDNSLPSIYLSYVVKPMDTLAAIAARYFTTLTDLMNVNDMGSAVISDGDILAVPIPACASNFPKHATDFGLLVPNGSYTITASHCVQCSCGPQNLDLYCIPSSLAVSCSSMQCKRSNLTLGNVTVQHMSSGCNVTSCNYDGFVHGNILTMMASSLQSHCPDQQRFPPLRAPPSSVARESVVAYAPSVSPSQPPLPSQSPSSASEGTGLTAPKSSVMPATRSFPVFSPANGHVGRISSAAPSLVNHIPILLPSFMLLLITLM 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01352 424 MobiDBLite consensus disorder prediction 360 377 - -
Viun8g01352 424 SMART LysM_2 174 217 IPR018392 -
Viun8g01352 424 SMART LysM_2 108 155 IPR018392 -
Viun8g01352 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 7 326 - -
Viun8g01352 424 CDD LysM 174 216 IPR018392 -
Viun8g01352 424 CDD LysM 115 154 IPR018392 -
Viun8g01352 424 Gene3D LysM domain 164 225 IPR036779 -
Viun8g01352 424 ProSiteProfiles LysM domain profile. 173 216 IPR018392 -
Viun8g01352 424 MobiDBLite consensus disorder prediction 349 377 - -
Viun8g01352 424 Pfam LysM domain 115 155 IPR018392 -
Viun8g01352 424 Pfam LysM domain 175 217 IPR018392 -
Viun8g01352 424 SUPERFAMILY LysM domain 173 218 IPR036779 -
Viun8g01352 424 ProSiteProfiles LysM domain profile. 107 154 IPR018392 -
Viun8g01352 424 Gene3D LysM domain 106 163 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01352 Viun-Chr8 20670123 20672789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01352 4 423 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 59.953 1.71e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01352 - - pvu:PHAVU_008G163700g 721.465