Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00405 ATGTTATCCCACTCGCACTCCCAATTCATAAATCTTCGCTTTTCGCAACTCCCTCACCAGCCCCTTTCTCTCCTTCACATTAATCTTGCTCCGAACCTCACATACAAACCCCAACACGAACCTCCGGTTCGGATCCTAATCCCTCTCATGGGAACCGAGAGTTACACATACCTAGGACGCAATTTCAGCCAACTCAGCATCAACGACGCTTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCGCAAACGCGCCGCTTCCTCATCACCTGCGCCACCGAAAACTCCGACGATTTGATCCGTCAACTCGTCGCCGATCTCCACTCCGCCTCACTCGACGATCAGAAACAAGCCGCCATGGAAATCAGGTTGCTCGCCAAGAACAAGCCGGAGAATCGAGTCAAAATCGCCAAAGCCGGCGCAATCAAACCGCTGATTTCACTCATTTCGTCGCCGGACCTCCAGCTCCAGGAATACGGCGTCACCGCGATTTTGAATCTCTCGCTCTGCGACGAGAACAAGGAGGCAATCGCCTCCGCAGGCGCGATTAAGCCGCTGGTTCGCGCGCTGAGCACGGGAACCGCGACGGCAAAGGAGAACGCGGCGTGCGCGCTGCTGCGGCTGTCGCAGGTGGAGGAGAACAAGGCGGCGATTGGGCGGTCCGGCGCGATTCCGCCGCTGGTGAGCCTTCTGGCTAGCGGCGGGTTCCGCGCGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAAGGAGAACAAGCTTAGGGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGTTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCGTACGTGGTGAGCGTGCTGGTGACGGTGCCGGAGGCGAGGGCGGCGCTGGTGGAGGAAGGCGGCGTGCCGGTGCTGGTTGAGATCGTTGAGGTCGGAACTCAGAGGCAGAAGGAAATCGCGGTTGTTATTCTATTGCAGGTGTGCGAAGATAGCTTGGCGTGTCGCTCTAGGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTGGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAATTAATTGAGCTTCTGCGGCAACCAAGATCCAGCAACGGCGGTGGTGGTGGTCTTGCGTCAGAAGTGGCGGTGTAA 1209 0.5831 MLSHSHSQFINLRFSQLPHQPLSLLHINLAPNLTYKPQHEPPVRILIPLMGTESYTYLGRNFSQLSINDASSSSAFSDCNSDRSGEFATASSQTRRFLITCATENSDDLIRQLVADLHSASLDDQKQAAMEIRLLAKNKPENRVKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKEAIASAGAIKPLVRALSTGTATAKENAACALLRLSQVEENKAAIGRSGAIPPLVSLLASGGFRAKKDASTALYSLCTVKENKLRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVTVPEARAALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSLACRSRVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSSNGGGGGLASEVAV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00405 402 Gene3D - 262 390 IPR011989 -
Viun8g00405 402 PANTHER U BOX DOMAIN-CONTAINING 85 384 - -
Viun8g00405 402 SUPERFAMILY ARM repeat 107 380 IPR016024 -
Viun8g00405 402 FunFam RING-type E3 ubiquitin transferase 99 389 - -
Viun8g00405 402 Gene3D - 84 246 IPR011989 -
Viun8g00405 402 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 233 IPR000225 GO:0005515
Viun8g00405 402 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 232 274 IPR000225 GO:0005515
Viun8g00405 402 SMART arm_5 221 261 IPR000225 GO:0005515
Viun8g00405 402 SMART arm_5 180 220 IPR000225 GO:0005515
Viun8g00405 402 SMART arm_5 303 343 IPR000225 GO:0005515
Viun8g00405 402 SMART arm_5 139 179 IPR000225 GO:0005515
Viun8g00405 402 SMART arm_5 262 302 IPR000225 GO:0005515
Viun8g00405 402 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 150 192 IPR000225 GO:0005515
Viun8g00405 402 Pfam Armadillo/beta-catenin-like repeat 181 219 IPR000225 GO:0005515
Viun8g00405 402 Pfam Armadillo/beta-catenin-like repeat 223 260 IPR000225 GO:0005515
Viun8g00405 402 Pfam Armadillo/beta-catenin-like repeat 140 178 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00405 Viun-Chr8 2753555 2755576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00405 91 394 U-box Gene Family AT2G23140 49.671 5.28e-87 275