Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00401 ATGCGAGGAGAGCACAGGGGACTCGTGCACTGCGTCGTGAGTCAAGTCCTGCCGTCACTAGCCATGGCCTCGGTGGAGCAGCCTCCTAAGAAGCGGAAGCTCTATGAGCCTTTACCGGAACCGCCACCGTCTTCGCCTCCGTCACCGCCGCCTCCTGCAACCGAACCGACCCCTCCCTCTCCGCAAACCCTACCCCCGCCGTCCCAGGAAGAGATTCTCGCGAAGCGGCGGAACAAGGACGAAATTCGAAGCGTCTTCGAAGGTTACAAGCGGATTCAGCGTTGCTTGCTTCAGAAAGACGCTCCTTCCGCCATGGCAGACCTTGAACAGAGTTATCTCGTGCTCATAACTTCTTCCAGAGGTTGTATGAGTGTACAAAGAATTGTGGCCGATCTTATTCCTCGATATGCATGTCACTGTCCAACAGCCTTGGAAGCTGCAGCTAAAGTTGTTATTAATATGCACAACTTTAGTCTGGCATTGATTAGTAGAGGAGAGGATTCCAACGGTATTGCATTTGAAACTGCTAGAGCCTGTATTTGTGGCCTAGCTGATGTCTGCTGCGTTGCTTCATCAGTGGCACCAACATCAGCTGTAATTAGAGGAATTTGCTCGGCAGTTTTTCAGAATGTGCTCACCTTTTTTATGGCCTTATTTGAAGGAAAGGATGTCTTACATATGATTGACAAGAATTTCCTGAATGTGCAAGATAACCCCGAGGTCTTTTCTGAGTTGAAACAAAAGGTTTTAGAGAAGGATGGATCTCCATTGTCTAAACTGTCCAAATTTCGAGTATTATGTCTACTTCGGATTTTTTTCTCGTGTCCAAAAGATTTGCTTGCAGCTTGTTTGGATCTCTTAGGTTCTGCCACAAAAGAGGGAACTAAGAATGAAGGACAGCATTTTTTGAGCCAGGTGACTGGCATGTTTGATGATGATAAAACAGTTCACCTTTTGGATAACGCAATTAGTAGACCTAATTCGTGTACAGATTCTACTGGGTCAGGAATCAGAGATGATGAGGCTGGTGAGGAAATTGTGATCGGAGACAACAATGTTTCTGGTGTTGATTCATCCGTTGGCAAGAGCTGTTTGCTTATACGGGTTCTTGACAAGGATCCCCAACTCCGGAAATGGATGTTGTGTAGATGTAAGAAGTTACTTGACTTGCTCCCAAATGCATCACTGGAAATTATGTCAATACTGCAAGGAATTCTTGGAATGTTTGCTCAACAAACAGATTTGGAAGACTGTCAAGGAGATAGTGATGAAGATAAATCTGATTCTTCTACTTACATTAATAGTAAGAAGTACATGGTTCCTAGAATCTCTGAGGAACATGAAAGCATTGGTGAATCATCTGGAAAAGGCAGCAATTTGAGAGTTTATGTCGGTTCTACTGATGGTTTTACTGATAAGGTTTCTGATAAATATGTGATGGCTCATAGCTCTGCAGTTTCTCTTGACAATGCTCCAGCATTAAAAGTGGGTTTGCAGTATGATAATGGAGTCTCAAAGCCCATGAGCATTGGGGTGGGGGAAGAAGGAAATATGCCAAATGTTAGATGTTCCACACCTAGGGACTCAGTAAGCCATCAAGTATTTTCACCAGCAGTTAGAACACCAGTAAATTTTAGGAGTAATTCATTTGACGGTAGAAATGACTTCCAGAATGTAGAGAAAAATCAAGTCTCAAGTATGAATTTCAGTTCACCTCCGTTGAGATCCTCTAGTGGTTCTGCTAGTAATTCTTTGGCATCTCCTAATCATCATTTTATGTCACCAACTGCTTCAACAAAAGGTCAAATTGTGTGGTGCTGTGATGGGGATCCCGCTGCCATGGATATTGTCTCTGCTTCTAGGCTGCTATGGATAGGTTATGTGGGACCTGATGTGCCCGAAAGTCATATTAGGTTTCACCTAGAAAGATTTGGTCCTATTGAAAAATTTATTTTCTTCCCAGTCAAAGGGTTTGCCTTAGTCGAGTACAGAAGGATCATTGATGCAATAAAAACTCGACACTGTTTACCTGGATGTTTCCCTTGCCGTGTAAAGTTCATGGATGTTGGGCTTGGAACTAGGGGTGCAATGAATGGTGTTGCAGTTGGCTCTAGTTCTCATATTTATGTTGGAAATATTCCCAGTCAATGGGCCAAGGATGAGGTCATGCATGAAACAAGAAAAATGATACACAAGGGTCCTCTTGCATTCATTGATCTTAGCTGTGAGTTTGCATTACTCATGGAATTTGAAACGCCTGAAGAAGCTACAGCTGTCATGTTGCATCTGAGACAACTGCGAAGAGAAAGAAGTAACTACAATCAGCATTTTGGTCCAGCTCCAGGAACAGTTAATGTTGGAATTGGGCATGCTTATATGGATGGTGCAAGACCTGTACCTCCCCCTCCCCCTCCCCCTCCCCATCTTGACCTTCAAGTTAACAATTCTGCTGGATCACCACATGCTCGAACTCTACCAGGGAGCCCCGCAGATAGCAGTCGAACGGCGATATCTCACTTGTCCAACTTACTTGCTTCATTGCGCTCAAAGTATAATATTAATCAAAACCTAGGTCTCAATGATAATTATATGACTGGCAATAATTGTCCTTCCATGCGAGAAGAAGATATGGTGCCATCCAGCACTCTGTGCATAACTATTCCACATTGTAGTAGCTCTATGTTCCTTTCAGATGATGAGTTAATGTCCATTTGCAATCTTGCCATTGGAAACGCTGGATCCATTGTGCAGTTGACACAAGCAAGCACACAGATGGGGTGCAGTTGGTTTGTCGAATGCAATAATATTGATGGAGCAGTTTCTACTCTAAAGAATCTCCGTGGTTGTCCTGGATTGTTCTTTCAGATAGAATTCAGCAAACCTGGACATCAGAACACTGTACCGTTTTCAGTTAAACCCGAGAACAATCCTATGGAGCTTGTGTCCCCCAGAATAAATTCTGAAAATCATACTAGTGGAATACAGAGTGCACCTCTGCCTCATTCAAACTGGCACTTTCCTGGTTCTAGGGAGATGTCAGAGGTTGGGGCAAGGAAACCTGACGGTTATGATAATTTGTCTCAGGATCCTCATCAAGGAGGTAATGTTCCACCTTCACATTCTGGAGCACATGGACCTTCCATCCCACCAGTGCAGCAAATTCAGTCATCTACGTTTTCTCACCCTGTTTATGCTCCTCCAAATGGTCCATGGGATCATCGGGGAATTAATAATCATTTTCCAGTCAGCCAGTTCAACACAGGAGTAATGCCAAATAATTTTCATGGTAATGCTGTTGTAAGTCCTTTTATTCCTGCTTCAGTGACTCCACTTGCTCAGATACAAGGAACTCCAATGCATCCCTATAACCAGCAGGTGCCTCCATCAATTGTACCACCACCTTTATCATCCTTACCACCTCCTCAGCCTGAAATGCCACCTCCACTTCCTCCTTCTCCACCACCTTTACCCCAGGTTCAGCCTCCCTTGGTTCCTCCACTGCCTAGTTCTCCTCCTCCCCCTCCTCCTCCGCCACTGCCTGTCCAAGAACCAGTCAATATAGAATGTCCAGAGCAGTCTTTGCAGTATCAATGGCAGGGGAATCTATGTAAAAGTGGGGTCAATTACTGTACAATTTATGCGTGCAAGGCAGATTCAGCTATTTGCCGATACTCAAATGCCATACCCGAGCCTGCTGAGTGGCCCACAAAATTAGACATGACAAAACGCACGGATCTTCGACATGTAAAATCAACATTTGCTGCTACACCATCTCATAGAAGGGAAGTGTGCCGTCTGATCCCATCTTCCACTACTGATCACAAAAGGTTTCAGGATTTCATATCATACTTAAAGCAGAGGGACTGTGCTGGGGTTATTAAAATCCCAGCTTCAAAATCCATATGGGCAAGGCTGCTATTCATTCTCCCCCACACACTTGAAACTTGCTCTTTGCTTTCTATTGCACCTGATCCCTCAGATTGTCTCATTGCTTTGGTTCTTCCCAAAGAAACGAACTTTGAGTGGATATGA 4032 0.4422 MRGEHRGLVHCVVSQVLPSLAMASVEQPPKKRKLYEPLPEPPPSSPPSPPPPATEPTPPSPQTLPPPSQEEILAKRRNKDEIRSVFEGYKRIQRCLLQKDAPSAMADLEQSYLVLITSSRGCMSVQRIVADLIPRYACHCPTALEAAAKVVINMHNFSLALISRGEDSNGIAFETARACICGLADVCCVASSVAPTSAVIRGICSAVFQNVLTFFMALFEGKDVLHMIDKNFLNVQDNPEVFSELKQKVLEKDGSPLSKLSKFRVLCLLRIFFSCPKDLLAACLDLLGSATKEGTKNEGQHFLSQVTGMFDDDKTVHLLDNAISRPNSCTDSTGSGIRDDEAGEEIVIGDNNVSGVDSSVGKSCLLIRVLDKDPQLRKWMLCRCKKLLDLLPNASLEIMSILQGILGMFAQQTDLEDCQGDSDEDKSDSSTYINSKKYMVPRISEEHESIGESSGKGSNLRVYVGSTDGFTDKVSDKYVMAHSSAVSLDNAPALKVGLQYDNGVSKPMSIGVGEEGNMPNVRCSTPRDSVSHQVFSPAVRTPVNFRSNSFDGRNDFQNVEKNQVSSMNFSSPPLRSSSGSASNSLASPNHHFMSPTASTKGQIVWCCDGDPAAMDIVSASRLLWIGYVGPDVPESHIRFHLERFGPIEKFIFFPVKGFALVEYRRIIDAIKTRHCLPGCFPCRVKFMDVGLGTRGAMNGVAVGSSSHIYVGNIPSQWAKDEVMHETRKMIHKGPLAFIDLSCEFALLMEFETPEEATAVMLHLRQLRRERSNYNQHFGPAPGTVNVGIGHAYMDGARPVPPPPPPPPHLDLQVNNSAGSPHARTLPGSPADSSRTAISHLSNLLASLRSKYNINQNLGLNDNYMTGNNCPSMREEDMVPSSTLCITIPHCSSSMFLSDDELMSICNLAIGNAGSIVQLTQASTQMGCSWFVECNNIDGAVSTLKNLRGCPGLFFQIEFSKPGHQNTVPFSVKPENNPMELVSPRINSENHTSGIQSAPLPHSNWHFPGSREMSEVGARKPDGYDNLSQDPHQGGNVPPSHSGAHGPSIPPVQQIQSSTFSHPVYAPPNGPWDHRGINNHFPVSQFNTGVMPNNFHGNAVVSPFIPASVTPLAQIQGTPMHPYNQQVPPSIVPPPLSSLPPPQPEMPPPLPPSPPPLPQVQPPLVPPLPSSPPPPPPPPLPVQEPVNIECPEQSLQYQWQGNLCKSGVNYCTIYACKADSAICRYSNAIPEPAEWPTKLDMTKRTDLRHVKSTFAATPSHRREVCRLIPSSTTDHKRFQDFISYLKQRDCAGVIKIPASKSIWARLLFILPHTLETCSLLSIAPDPSDCLIALVLPKETNFEWI 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00401 1343 SUPERFAMILY RNA-binding domain, RBD 610 680 IPR035979 GO:0003676
Viun8g00401 1343 MobiDBLite consensus disorder prediction 24 67 - -
Viun8g00401 1343 MobiDBLite consensus disorder prediction 1125 1181 - -
Viun8g00401 1343 MobiDBLite consensus disorder prediction 988 1053 - -
Viun8g00401 1343 Gene3D - 612 691 IPR012677 -
Viun8g00401 1343 CDD SPOC_FPA-like 1197 1335 - -
Viun8g00401 1343 MobiDBLite consensus disorder prediction 1116 1181 - -
Viun8g00401 1343 MobiDBLite consensus disorder prediction 566 587 - -
Viun8g00401 1343 MobiDBLite consensus disorder prediction 38 66 - -
Viun8g00401 1343 MobiDBLite consensus disorder prediction 812 833 - -
Viun8g00401 1343 Pfam SPOC domain 1192 1334 IPR012921 -
Viun8g00401 1343 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 23 1294 - -
Viun8g00401 1343 MobiDBLite consensus disorder prediction 796 810 - -
Viun8g00401 1343 MobiDBLite consensus disorder prediction 795 833 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00401 8 2720134 2731907 Viun8g00401 8 2720134 2731907 ECH