Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00400 ATGGAACCTGTTGGAGCTTTCCCTGATGGAGAATGGGATTGCTTTCGCAGGATGTTTGATCATGAGCATGATTTCACACAGGAATTTCCTCTTCTGCTTGATGGGGGCGATGAACTGAACATTGTGACACAGCAAGCCAATTTCTGTGCTGCTCCTGAAGCTGCTGAAAATGAGCTCATGTTTTATTCTTTAGATGCTCACAACAATTCAAATTCTTCACAGTATATTTCTCAGGAAAGTAGCTATAGTAACAGTAGCAATTGTAGTGGTGATGACACTGTGTTCATTGCCAATCCGGGTAGCTCAAACTATTATTTTAGTTACCCTGATCACATGTTAGCAAATAATGCATGTGTATATTCCTTGGATGAGAAACATTTTGCCCCTTTTGCTCCGTCGCTTGGTAACATTGCAACCGAGGAGAGTGTGAAGCTGTATCAAGAATTGGCAAGTGACAGATTGGAGAATTCTGAATGCAATCAAATGGAACCTGTTGTTTTTCCCTCCAAGAGGAAGCTTGATGATGTCCCTGCTGAAGGTAAAATCAACAACAGATCAGAGAATCACAAGAAAAAAGCTCGTGTTTTAAAAGAAGTGCAAGGATGTATGAAGAACAACACATGGTCCAAGAAGAATGAGAAACATGACAGCAATAGGGAAGATGCAGAAGAGAGAAATGCAGGATCAGATGGACAAAGCTCTAGCAGTTACATGTCAGATGATGATAACAAGGAAAATATTGGAGGAGCTAATTCAGAATCTAAATCTGCTCTCAACTCAAATGGAAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGTCTGTATGCAAGGAAAAGAAGAGAGAGAATAAATGAACGATTAAGAATCCTACAGAATCTTGTCCCTAATGGAACTAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGCTTCAAATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGACTTGACATTGGAATCAATCTGAACCTGAAGAACTCGCTACCACTCTGA 1071 0.3996 MEPVGAFPDGEWDCFRRMFDHEHDFTQEFPLLLDGGDELNIVTQQANFCAAPEAAENELMFYSLDAHNNSNSSQYISQESSYSNSSNCSGDDTVFIANPGSSNYYFSYPDHMLANNACVYSLDEKHFAPFAPSLGNIATEESVKLYQELASDRLENSECNQMEPVVFPSKRKLDDVPAEGKINNRSENHKKKARVLKEVQGCMKNNTWSKKNEKHDSNREDAEERNAGSDGQSSSSYMSDDDNKENIGGANSESKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGINLNLKNSLPL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00400 356 MobiDBLite consensus disorder prediction 168 198 - -
Viun8g00400 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Viun8g00400 356 SMART finulus 276 325 IPR011598 GO:0046983
Viun8g00400 356 FunFam Basic helix-loop-helix transcription factor 271 328 - -
Viun8g00400 356 MobiDBLite consensus disorder prediction 228 242 - -
Viun8g00400 356 MobiDBLite consensus disorder prediction 208 227 - -
Viun8g00400 356 CDD bHLH_AtIND_like 271 333 - -
Viun8g00400 356 MobiDBLite consensus disorder prediction 168 281 - -
Viun8g00400 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 334 IPR036638 GO:0046983
Viun8g00400 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 342 - -
Viun8g00400 356 Gene3D - 269 327 IPR036638 GO:0046983
Viun8g00400 356 Coils Coil 205 225 - -
Viun8g00400 356 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
Viun8g00400 356 MobiDBLite consensus disorder prediction 249 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00400 Viun-Chr8 2706493 2708281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00400 248 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 84.615 3.53e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g00400 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00400 8 2706493 2708281 Viun8g00400 8 2706493 2708281 ECH