Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00399 ATGGCTCTGGAAGCACTCAACTCACCCACTGCAACTGCTCCATCTTTCTCTTTCGAAGACCCAACCATTCCATGGGCAAAACGCAAGCGTTCCAAGCGTTCCCGCGACCATCCTTCAGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCACCACCACCACCGCCGCCACCGTTACCACCGCAACTAACCGCCACACCACCGTTTCACCGTCACAACACCCCACCCCAGATCCTTCCACCAAACTCACCTACAAATGCTCTGTTTGTGACAAAACCTTCCCCTCTTACCAAGCTCTCGGGGGACACAAGGCCAGCCACCGAAAACTCGCCGTGGCCGACGACCAGCCTACCTCCTCTGGCATCACCGCCACCAGCACCGTCAGTACGACCGCTTCCGGCTGTCGTGCCCATGAGTGCTCCATCTGCCACAAGTCCTTCCCCACTGGACAGGCTCTTGGTGGACACAAACGTTGTCACTACGAAGGGAACAACAGTAACAATAACAACGGAAACAGTATGGTAACCGCCTCTGAAGGTGTGGGGTCCACTCACACCGTGAGTCACGGTCATCATCACCGGGATTTTGATCTGAATATCCCTGCTTTTCCTGAATTCGCGACCAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCTGTGATGAAGAAGCAGCGTCTCTTCGTGATTCCCAAAATTGAAATCCCTCATTTTCAGTGA 729 0.5501 MALEALNSPTATAPSFSFEDPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGTTTTAATVTTATNRHTTVSPSQHPTPDPSTKLTYKCSVCDKTFPSYQALGGHKASHRKLAVADDQPTSSGITATSTVSTTASGCRAHECSICHKSFPTGQALGGHKRCHYEGNNSNNNNGNSMVTASEGVGSTHTVSHGHHHRDFDLNIPAFPEFATKVGEDEVESPHPVMKKQRLFVIPKIEIPHFQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00399 242 MobiDBLite consensus disorder prediction 1 37 - -
Viun8g00399 242 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Viun8g00399 242 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 206 IPR044653 GO:0003700
Viun8g00399 242 SUPERFAMILY beta-beta-alpha zinc fingers 87 163 IPR036236 -
Viun8g00399 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Viun8g00399 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Viun8g00399 242 MobiDBLite consensus disorder prediction 173 196 - -
Viun8g00399 242 SMART c2h2final6 88 110 IPR013087 -
Viun8g00399 242 SMART c2h2final6 141 163 IPR013087 -
Viun8g00399 242 Pfam C2H2-type zinc finger 88 112 - -
Viun8g00399 242 Pfam C2H2-type zinc finger 140 164 - -
Viun8g00399 242 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Viun8g00399 242 MobiDBLite consensus disorder prediction 173 188 - -
Viun8g00399 242 Gene3D Classic Zinc Finger 86 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00399 Viun-Chr8 2699388 2700436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00399 1 238 C2H2 Transcription Factor Family AT1G27730 49.412 1.55e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun8g00399 zf-C2H2_6 9.4e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00399 8 2699388 2700436 Viun9g03395 9 40369735 40370869 PCT