Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00381 ATGGCATCGGGAAGCAGGGATATGGATCGGGTCAAGGGCCCATGGAGCCCGGAGGAGGATGAGGCGCTGCAGAGGCTGGTGCAGGCTCTGGGGCCGAGAAACTGGACGGTGATAAGCAAGTCCATTCCTGGTCGATCCGGCAAGTCGTGCCGGTTACGGTGGTGCAACCAGCTCTCGCCGGAGGTGGAGCACCGTCCATTCACGCCAGAAGAGGACGATGCTATTGTCAGGGCCCACAGTAGGTTTGGTAACAAGTGGGCCACCATAGCACGTTTGCTCAACGGCCGCACCGATAACGCCGTCAAGAACCACTGGAACTCCACTCTCAAGAGAAAATGCTCCGCCCTAGATCTCGATGACAGGAATCGTCCACCGCTGAAGAGATCCGCCAGTGTTGGTGCGGGTTATTTAAACCCGAGCAGTCCATCCGGGTCTGATTTAAGCGATCCGGGTCAGCCCGCTCTATCGACTCTTTCGGCTTCGGCCCTCTGCAGGCCCAATCTCATGGAAACCGCCTCTTCACTCTCCGATCCAGCCACTTCACTGAGTTTATGTCTCCCCGGACTAAGCTCTGAGCCTAACACGGTAGCTGTACAGCGGCCAGCATCGCCGCCGCCGGCGGTGCCGCCTCCGGTGGTGACGGTGGAAGAGCGTGGGAAGCAATTGTTCAACGCGGAGTTCTTGATGGTGATGCAAGAGATGATAAGGAAGGAAGTGAGGAGTTACATGTCAGGGATGGAGGTGAAGAATGGGTTGAGAATACAAACGGAAGCCATTGGAAACGCGGTGATGAAGCGCATGGGAATCAGCAACATCGAGTGA 822 0.5693 MASGSRDMDRVKGPWSPEEDEALQRLVQALGPRNWTVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDDAIVRAHSRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSALDLDDRNRPPLKRSASVGAGYLNPSSPSGSDLSDPGQPALSTLSASALCRPNLMETASSLSDPATSLSLCLPGLSSEPNTVAVQRPASPPPAVPPPVVTVEERGKQLFNAEFLMVMQEMIRKEVRSYMSGMEVKNGLRIQTEAIGNAVMKRMGISNIE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00381 273 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Viun8g00381 273 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Viun8g00381 273 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Viun8g00381 273 Gene3D - 65 130 - -
Viun8g00381 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Viun8g00381 273 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Viun8g00381 273 PANTHER MYB PROTEIN-RELATED 12 164 - -
Viun8g00381 273 MobiDBLite consensus disorder prediction 116 154 - -
Viun8g00381 273 FunFam Transcription factor MYB44 66 112 - -
Viun8g00381 273 CDD SANT 14 56 IPR001005 -
Viun8g00381 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Viun8g00381 273 SMART sant 11 60 IPR001005 -
Viun8g00381 273 SMART sant 63 111 IPR001005 -
Viun8g00381 273 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Viun8g00381 273 MobiDBLite consensus disorder prediction 134 154 - -
Viun8g00381 273 CDD SANT 66 109 IPR001005 -
Viun8g00381 273 Gene3D - 11 63 - -
Viun8g00381 273 FunFam MYB transcription factor 12 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00381 Viun-Chr8 2536665 2538461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00381 6 250 MYB Transcription Factor Family AT4G37260 50.883 5.26e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g00381 Myb_DNA-binding 5.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00381 8 2536665 2538461 Viun2g02153 2 29511140 29513195 ECH
Viun8g00381 8 2536665 2538461 Viun3g03877 3 46183431 46184894 ECH
Viun8g00381 8 2536665 2538461 Viun8g00381 8 2536665 2538461 ECH
Viun8g00381 8 2536665 2538461 Viun9g03432 9 40558502 40559578 PCT