Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00377 ATGTCTCACCATTACCCAAAACACCTTCTGGACACCCTATACTGCTCAGAGGACCACATTCATTTGGAGGAACAAAAACAAAGAGAAGAAGACGATTACATTAGCACAACCTCAAAACCAGACTTCTCCGATGTGGTCCTTTCAGAACAAGACCTCTTCTGGGACACCCACGAGCTCTCTTCTCTTCTCGCCAGAGAAAACCTTAACAACCTCTCAATCTCTCTCCCAAACAACCCTTCTCTGGCTTCTTCTCGCGGAGAAGCCGTGGAATGGATTCTCAAACTGAATCTTCACCATTCCTTTTCTACCCTCACAGCACTTCTCGCAGTTAACTACCTCGACAGGTTCCTCTGCACCCTCAGATTCCAGAACGACAAACCATGGCTCACGCAACTCGTTGCAGTGGCGTGCCTCTCTCTTGCAGCTAAAGTTGAAGAGACCCACGTGCCCCTTTTCGTGGACCTCCAAGTGGGGGAGAGTAAGTACCTTTTTGAAGCGAAAACGGTTAAGAGAATGGAAATCTTGGTTCTTTCCTCACTTGGGTGGAAGATGAACCCAGTAACACCTCTCTCGTTCCTTGATTACATCACCAGGAAACTTGGCTTAAAGGGTCATCTCTGCTTGGAGTTTCTCAGAAGGTGTGAATCCGTTCTTCTCTCTGTCTTTGCAGACTTAAGATTTATGAGTTTTCTTCCTTCTGTGTTGGCAACTGCAACGACGATGCGCGTGGTGAGCGTTGTGGAGCCTGGTTTGGGAGAGGAATACCAAGATCAGCTCTTGGGTATTCTCGGAATCGACAAGGAAAAGGTGAAAGAATGCTACAAGGTGATGATGGAGGTTGTGTCAGGGAAGAGTGAAGAGGGTAAAAGAGGGAATTTGAAGAAAAGGAAGTTTGAGTGCGTTCAGTGTAGCCGAAACGACGTGATGGAAGGGTCGTTTAGCTGTGATAGTTCGTGTGATGCGTCGTTGAAGAAAAGTAGAAGCCAAGATCAGCTTCTGTTGAAGCATTCAAACTCAGATTTTCTCACCATTCCTCGCTAG 1041 0.4688 MSHHYPKHLLDTLYCSEDHIHLEEQKQREEDDYISTTSKPDFSDVVLSEQDLFWDTHELSSLLARENLNNLSISLPNNPSLASSRGEAVEWILKLNLHHSFSTLTALLAVNYLDRFLCTLRFQNDKPWLTQLVAVACLSLAAKVEETHVPLFVDLQVGESKYLFEAKTVKRMEILVLSSLGWKMNPVTPLSFLDYITRKLGLKGHLCLEFLRRCESVLLSVFADLRFMSFLPSVLATATTMRVVSVVEPGLGEEYQDQLLGILGIDKEKVKECYKVMMEVVSGKSEEGKRGNLKKRKFECVQCSRNDVMEGSFSCDSSCDASLKKSRSQDQLLLKHSNSDFLTIPR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00377 346 CDD CYCLIN_AtCycD-like_rpt2 187 277 - -
Viun8g00377 346 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Viun8g00377 346 SMART cyclin_7 90 178 IPR013763 -
Viun8g00377 346 SMART Cyclin_C_2 187 307 IPR004367 -
Viun8g00377 346 SUPERFAMILY Cyclin-like 188 286 IPR036915 -
Viun8g00377 346 SUPERFAMILY Cyclin-like 63 185 IPR036915 -
Viun8g00377 346 CDD CYCLIN_AtCycD-like_rpt1 85 182 - -
Viun8g00377 346 FunFam CYCLIN D32 186 275 - -
Viun8g00377 346 PANTHER CYCLINS 31 285 IPR039361 -
Viun8g00377 346 Gene3D - 186 275 - -
Viun8g00377 346 Pfam Cyclin, N-terminal domain 79 185 IPR006671 -
Viun8g00377 346 FunFam D6-type cyclin 69 185 - -
Viun8g00377 346 Gene3D - 82 185 - -
Viun8g00377 346 Pfam Cyclin, C-terminal domain 187 295 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00377 Viun-Chr8 2484258 2486119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00377 9 280 Core Cell Cycle Gene Families AT4G34160 50.000 5.83e-89 270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00377 8 2484258 2486119 Viun2g02147 2 29486686 29488503 ECH
Viun8g00377 8 2484258 2486119 Viun3g03874 3 46115251 46117147 ECH
Viun8g00377 8 2484258 2486119 Viun7g03668 7 37599806 37601988 ECH
Viun8g00377 8 2484258 2486119 Viun8g00377 8 2484258 2486119 ECH
Viun8g00377 8 2484258 2486119 Viun9g03435 9 40592304 40594291 PCT