Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00373 ATGGGCCAATCGGCGTCCTCGGCTGCAGCCGTCGCTTGTCGTCGCGAGAGGGACCAAGGCAACCGCTCTGTCAATATCTCTAAGACCAGATCCACAGCCTCGGTTTCGCCGATGGTTAGTTATTCCTGTGGCAGCGGCGAAGGCGACAGCGAAAACCGCCGCGTTGAGGCGGTAACTGATGGAACCACCGACTACATATCTGATCTCCCTAACGAGTGTCTGGCCTCGGTGTTTCAGTTTCTTAGCTCCGCTGATCGGAACCGCTGTTCGCTCGTTTGCCAGCGGTGGCTCCAGATCGAAGGACAGAGCCGCCACCGTCTCTCTCTGAACGCAGAATCAGAGCTTTTTTCGGCGATTCCATCGCTCTTCTCTCGGTTCGACTCGGTCACGAAGCTTGCGCTGAAGTGTGACCGTAGATCCGTGAGCATACGCGACGACTCGCTGGTGCTGATCTCGCAGCGGTGCCCTAACCTCACGCGTCTAAAGCTACGCGCGTGCCGAGAGCTAACCGACGCCGGTATGGAAGTGTTTGCCAAAAACTGTAAGGGATTGAAGAAGCTTTCGTGCGGATCGTGCACGTTCGGATCCAAAGGAATGAACGCGGTGCTCGACAACTGCGCCTTGCTGGAGGAGCTCTCCGTGAAGCGCCTCCGCGGAATCACTGATGCGGCGGCTGCGGAACCGATTGGACCTGGTGTCGCGGGGTCGTCGCTGAAGACCATTTGCCTGAAGGAGCTCTACAACGGACAGTGTTTCGGAACGCTTATTCTCGGCGCGAAGAATCTAAAGACCTTGAAGCTTTTCCGGTGCTCTGGCGATTGGGACCGGCTTTTTCAATTAATGGCAGATAGAATGACTAAAATGGTTGAGGTTCACCTCGAGAGGCTTCAGATTAGCGACATTGGATTGCAAGCAATCGCGAATTACTCGAATTTGGAGATTCTGCATCTTGTTAAGACTCCTGAATGTTCTGATATTGGACTTGTTGCTATTGCAGATAGGTGCAAGCTTTTGCGGAAGCTTCACATTGATGGATGGAAGGCCAATCGAATTGGCGATGATGGGTTGATAGGTGTTGCTAAAGGTTGCCCTAATTTGCTTGAATTAGTACTAATTGGGGTTAACCCAACTAAGGCGAGTTTGGAAATGTTGGCATCTAATTGCCAGAATCTTGAGCGTTTGGCTTTGTGTGGAAGTGATTCGGTCGGTGATCCTGAAATTTCTTGCATTGCTGCTAAGTGTGTCGCTTTGAAGAAACTGTGTATTAAGAGTTGTCCTGTTTCGGATCAAGGGATGGAGGCATTGGCGAATGGGTGTCCCAATTTGGTGAAAGTGAAGGTTAAGAAGTGTAAGGGGGTTACCCCTGAGGGTGGGGATTGGTTGAGGAGGACTAGGGGGTCAGTTGCTGTTAATTTAGATACTGGTGAGGCAGAACTTCAGGAAGCTAGTGCTAGTGATGGAGGGGCACAGGAAAATGGTTTAGAGTTCCCTCAAATGCCTGCCCAAATCGCTGCGGCAGCATCATCAGCATCGGGCAGCACCGCCCGATCTAGTTCGTTCAAGTCGAGGTTAGGACTTTTATCTGGGAGGAGCTTAGTTGCTAGCACTTTGAGGAGATGGTCGGGTGGTAGCACTAGTGCACGCCATGGTTAG 1653 0.5191 MGQSASSAAAVACRRERDQGNRSVNISKTRSTASVSPMVSYSCGSGEGDSENRRVEAVTDGTTDYISDLPNECLASVFQFLSSADRNRCSLVCQRWLQIEGQSRHRLSLNAESELFSAIPSLFSRFDSVTKLALKCDRRSVSIRDDSLVLISQRCPNLTRLKLRACRELTDAGMEVFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCALLEELSVKRLRGITDAAAAEPIGPGVAGSSLKTICLKELYNGQCFGTLILGAKNLKTLKLFRCSGDWDRLFQLMADRMTKMVEVHLERLQISDIGLQAIANYSNLEILHLVKTPECSDIGLVAIADRCKLLRKLHIDGWKANRIGDDGLIGVAKGCPNLLELVLIGVNPTKASLEMLASNCQNLERLALCGSDSVGDPEISCIAAKCVALKKLCIKSCPVSDQGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRRTRGSVAVNLDTGEAELQEASASDGGAQENGLEFPQMPAQIAAAASSASGSTARSSSFKSRLGLLSGRSLVASTLRRWSGGSTSARHG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00373 550 SUPERFAMILY RNI-like 107 472 - -
Viun8g00373 550 Pfam Leucine Rich repeat 417 436 IPR001611 GO:0005515
Viun8g00373 550 Pfam Leucine Rich repeat 155 178 IPR001611 GO:0005515
Viun8g00373 550 PANTHER UNCHARACTERIZED 67 477 - -
Viun8g00373 550 Gene3D - 65 104 - -
Viun8g00373 550 ProSiteProfiles F-box domain profile. 63 119 IPR001810 GO:0005515
Viun8g00373 550 CDD F-box_AtTIR1-like 66 104 - -
Viun8g00373 550 FunFam F-box/LRR-repeat protein 3 isoform X1 65 105 - -
Viun8g00373 550 SMART LRR_CC_2 206 244 IPR006553 -
Viun8g00373 550 SMART LRR_CC_2 335 362 IPR006553 -
Viun8g00373 550 SMART LRR_CC_2 181 205 IPR006553 -
Viun8g00373 550 SMART LRR_CC_2 414 438 IPR006553 -
Viun8g00373 550 SMART LRR_CC_2 155 180 IPR006553 -
Viun8g00373 550 SMART LRR_CC_2 310 334 IPR006553 -
Viun8g00373 550 SMART LRR_CC_2 388 413 IPR006553 -
Viun8g00373 550 SMART LRR_CC_2 285 309 IPR006553 -
Viun8g00373 550 SUPERFAMILY F-box domain 62 99 IPR036047 GO:0005515
Viun8g00373 550 MobiDBLite consensus disorder prediction 1 33 - -
Viun8g00373 550 Pfam F-box domain 66 99 IPR001810 GO:0005515
Viun8g00373 550 Gene3D Ribonuclease Inhibitor 118 469 IPR032675 -
Viun8g00373 550 FunFam F-box protein SKIP2 101 482 - -
Viun8g00373 550 SMART fbox_2 69 109 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00373 Viun-Chr8 2449791 2451877 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00373 8 2449791 2451877 Viun8g00373 8 2449791 2451877 ECH