Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00371 ATGGCTTCTTCCACTTCCGTGAACATGGCGATTATGCTGTTGTTCGCGCTCTTCGCGCTTTCTTCAGCCTTGGACATGTCCATAATCTCCTACGACAACGCTCACCGGGACAAGGCCACGTGGCGCACCGAGGAGGAGGTCAAGTCCCTGTACGAGGAGTGGCTCGTGAAGCACGGCAAATTGTACAACGCGCTCGGGGAGAAGGATAAGAGGTTTCAGATCTTCAAAGACAACCTGCGATTCATCGACGAGACAAACGCCGATAACCGAACCTACAGGTTGGGACTGAACCGGTTCGCGGATCTGACCAACGAGGAGTACAGGGCCAGGTACTTGGGAACCAGGATCGACCCGAAGCGGAGGTTGGGAAGGACCCCGAGCAATCGTTACACGCCACGTGTCGGGGATGCACTGCCAGATTCCGTTGATTGGAGGAAGGAAGGTGCTGTTGTCCCAGTCAAAGACCAAGGAAGCTGCGGGAGCTGTTGGTCATTCTCAGCAATTGGTGCTGTTGAAGGAATCAATAAGATAGTCACCGGCGAACTGATTTCATTATCAGAACAAGAATTGGTGGATTGTGATACAGGATATAACATGGGATGCAATGGAGGACTTATGGACTATGCATTTGAGTTCATCATCAACAATGGAGGCATTGATTCCGAGGAGGATTACCCTTACCGTGCTGTAGATGGTACATGTGACCAGTACAGGAAAAATGCCAAAGTTGTTTCTATTGATTCTTATGAAGATGTTAAAGCCTATGATGAGTCAGCATTGAAAAAGGCCGTTGCAAATCAGCCTGTGAGCGTTGCTATTGAAGGAGGAGGAAGGGAATTTCAACTTTATTCATCTGGTGTGTTCTCTGGAAGATGTGGAACAGCACTGGATCATGGTGTTGTGGCTGTTGGGTATGGTACAGACAACGGTCATGATTATTGGATTGTGAGGAATTCATGGGGTGCTGATTGGGGAGAGGAAGGGTACATCAGAATGGAAAGAAATCTGGGTAACAGCAGATCAGGAAAGTGTGGAATTGCGATCGAGCCATCTTATCCCGTTAAGAATGGTGCAAACCCACCCAATCCTGGACCCTCACCCCCTTCACCCGTGAAGCCACCAAATGTTTGTGATAATTACTACAGCTGTTCAGATAGCGCAACTTGTTGCTGCATTTTCGAGTTTGGAAACGCTTGTTTTGAGTGGGGTTGCTGTCCTCTTGAAGGTGCTACCTGCTGTGATGACCACTACAGTTGCTGCCCCCATGACTATCCCATCTGCAACACCAGAGCTGGAACTTGTCTCAGGAGCGAGAACAACCCATTTGGAGTGAAGGCATTGAGGCGTACTCCAGCCAAACCCCATGGGTCCTTCAACAATGCTTAA 1386 0.4913 MASSTSVNMAIMLLFALFALSSALDMSIISYDNAHRDKATWRTEEEVKSLYEEWLVKHGKLYNALGEKDKRFQIFKDNLRFIDETNADNRTYRLGLNRFADLTNEEYRARYLGTRIDPKRRLGRTPSNRYTPRVGDALPDSVDWRKEGAVVPVKDQGSCGSCWSFSAIGAVEGINKIVTGELISLSEQELVDCDTGYNMGCNGGLMDYAFEFIINNGGIDSEEDYPYRAVDGTCDQYRKNAKVVSIDSYEDVKAYDESALKKAVANQPVSVAIEGGGREFQLYSSGVFSGRCGTALDHGVVAVGYGTDNGHDYWIVRNSWGADWGEEGYIRMERNLGNSRSGKCGIAIEPSYPVKNGANPPNPGPSPPSPVKPPNVCDNYYSCSDSATCCCIFEFGNACFEWGCCPLEGATCCDDHYSCCPHDYPICNTRAGTCLRSENNPFGVKALRRTPAKPHGSFNNA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00371 461 SMART Inhibitor_I29_2 51 107 IPR013201 -
Viun8g00371 461 SUPERFAMILY Cysteine proteinases 43 354 IPR038765 -
Viun8g00371 461 Gene3D Granulin 375 437 IPR037277 -
Viun8g00371 461 Gene3D Cysteine proteinases 30 356 - -
Viun8g00371 461 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Viun8g00371 461 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Viun8g00371 461 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Viun8g00371 461 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Viun8g00371 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Viun8g00371 461 FunFam Cysteine protease 1 374 437 - -
Viun8g00371 461 FunFam Cysteine protease 1 27 356 - -
Viun8g00371 461 CDD Peptidase_C1A 139 353 IPR039417 -
Viun8g00371 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Viun8g00371 461 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Viun8g00371 461 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Viun8g00371 461 Pfam Granulin 388 435 IPR000118 -
Viun8g00371 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
Viun8g00371 461 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 40 348 IPR013128 GO:0008234
Viun8g00371 461 SMART GRAN_2 377 434 IPR000118 -
Viun8g00371 461 SUPERFAMILY Granulin repeat 374 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00371 Viun-Chr8 2428537 2432072 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00371 8 2428537 2432072 Viun3g03870 3 46067768 46070189 ECH
Viun8g00371 8 2428537 2432072 Viun8g00371 8 2428537 2432072 ECH
Viun8g00371 8 2428537 2432072 Viun9g03440 9 40629079 40632231 PCT