Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00357 ATGGTAGCTACTAGTAACTCACTAACCATAACCATGAAGGTGCATCAGTTCGCACGTGGGTTCTGGGAGCACGAACCCTCCCTCACACTTGGCTGCAAACGCTTACGCCCCCTTGCCCCCAAGCTCTCCAACACCGACTCCACTACCTCCATCACTTCATCTCCTGTCACAACCTTCGACCTCAAGAGCTTCATCAAACCAGAAAGTGCCTCCAGAAAACTTGCATCCTCCGATGACAATAAGAGAGACCCAACTTCACCTCAAGGCCAAGGCCAGGTGGAAACGCATATTCCGGGAGGGACGCGGTGGAATCCGACGCAGGAACAGATAGGGATACTGGAGATGCTGTATAGAGGAGGGATGCGAACACCGAATGCTCAACAGATAGAGCAGATCACAGTCCAACTTAGCAAGTACGGCAAGATCGAAGGGAAGAACGTATTTTATTGGTTCCAAAACCACAAGGCACGCGAGAGACAGAAGCAGAAGCGTAACAACCTCGGTCTTGCTCATAGTCCTCGTACTCCCACCACACTAGTCTCACCTTCCTTTAGTTGTAGTGTAATAACCTCTTTGGACACCACAAAACGGGGGGAGGTAGTAGAAAGAGATGAAGAAGATAGTCCTTTGAAGAAGTGTAGGAGCTGGGCATTTGAGTACTTGGAAGAGCAAAGTTGGTCATCATGGAAAGAGGAGGAACAGAGAACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA 744 0.5 MVATSNSLTITMKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSNTDSTTSITSSPVTTFDLKSFIKPESASRKLASSDDNKRDPTSPQGQGQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTPTTLVSPSFSCSVITSLDTTKRGEVVERDEEDSPLKKCRSWAFEYLEEQSWSSWKEEEQRTLELFPLHPEGR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00357 247 CDD homeodomain 101 162 IPR001356 GO:0003677
Viun8g00357 247 Pfam Homeodomain 101 160 IPR001356 GO:0003677
Viun8g00357 247 ProSiteProfiles 'Homeobox' domain profile. 106 161 IPR001356 GO:0003677
Viun8g00357 247 SUPERFAMILY Homeodomain-like 100 164 IPR009057 -
Viun8g00357 247 Gene3D - 100 167 - -
Viun8g00357 247 PANTHER WUSCHEL-RELATED HOMEOBOX 4 12 247 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Viun8g00357 247 MobiDBLite consensus disorder prediction 81 105 - -
Viun8g00357 247 SMART HOX_1 98 165 IPR001356 GO:0003677
Viun8g00357 247 MobiDBLite consensus disorder prediction 70 105 - -
Viun8g00357 247 FunFam WUSCHEL-related homeobox 4 100 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00357 Viun-Chr8 2298384 2300198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00357 12 191 Wox Gene Family AT1G46480 61.053 7.91e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Viun8g00357 Homeodomain 1.6e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00357 8 2298384 2300198 Viun8g00357 8 2298384 2300198 ECH