Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00352 ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGCAAGAAACCATAGAATTTGATACATCAACTACTGCTGCAGTTGATCAACATATTTTCTGGAACAATATGCGAAATCCTGCAGAAAACCATTTTGCACTTCCCCCAAGTGATTTGAACCCGTCTTACCCAAATCCTATAAACCATGAATGGCAGAACCTAAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGTAATACTCAGAACGAGGTTACTAACAATGAGCAGAAAGGGGAGCTAGGATTATCATCTTCAATAAGTTCTGGTGCTATAGCTGCTCCAAGACTTGAAGAAAGGCGCTTTGAACCAAACAGTACTTTTTCGTTGGACAATGTCAATACAAGTTCAATGTATATGCGCAGCTCCAATTCTCACTTGGTGCCTCAGAATCTCAACCTGAATGCAAGCTTAGCAGATAGTGGCACTGATAATGGCTATCGTGTGGAACATCCTCCTAACTTGAACAAGTCTAGTGGACCGGTGAATGAGCATATTCAACCTTCACTTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGCACTAATGGTTTTTTGGTTGAGGATACTACTGATGCTAGGCCTGGTTGTTCTCTAGACACACGCCGTGTATCATGTAAAAGAAAGGCTGTTGAACGAAGTGTTGGGCAATCTTCAGGTGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAGTGCTTGGAACACTCTTCCTACTCAGGATTATGGTGGAAACAGTTTCAACAGATCTGCCTCAACAGAACAGGTGAATGCGAGACTTGGTTTGAGTACTGGGGATGGAGCCTCTGAGAGCATTACTTGGTCAAATGTTGCAGGAGGCTCAGAAAGCTTCCACAGAAATTTTCGTGTGAGGATAAATCCTTCAAGTCAACAAATTTCGGTTCCACCCCCTGCAATCCCAAGTGGGGGTGTTCTTAGGAATTCTGGTGTTTCTTCATCCTCTCCGATGTTGCAACGGTTTCATTCTGTCGATAATTCTCTGGACTTGAGGTCAGCACCACCTGTTGTTGATACCATGGTTGCTCAAAGCCAGCAGCCTCTTGTGATTCATGTTCCAGCTTTACCAAGGAATGTGCAGCCATTCAGGTGGAATGGAGGTTCCAGCTCAACAAACAATCATCCACCAAACACAGTTATATGTGCGGATAGAAATAATTTGCCAAACGAGGAACCGAGTTCAAGAAGTATGCCGAGAAACATTGTAGAATATCCTATGTTTGTGCCTGCAACCAATTTAAGAAATGTGGTTAGGAATCCAGCTAGAGCTTCAAATAGTGCAAATTTAAGTATTCCAGGAAATGTTGGTTCTTCATCGAGGGCAGCCTCAAATTCAGCTGTCAACCCTCCGTCTGCTCCTCCGGCGGCAGCGTGGGTTTCTCGGCCTAATCCTCAGCAGTATCCTCGCAGGTTATCTGAGTATGTTCGTCGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCGAGCAACAATTATGCTTCCTTCCGTGGTCCTTCTACTTCATCTGGGGTAAACCCATTTGAGAGGCAAGGTGATGGTGAATTTGGAATTCAGTATTCATTACGTTCTTTGGCTGCTGGTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTATTGGGCCTCATGCGTAGGGGTGGAAACCTACGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTCGCTGGAATTGCTGATATGCATGATCGACACAGAGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGCTACTTGCTTTGGAAGAACGCATTGGAAATGTGAGCACTGGCTTGAGTGAGGAGACCATATTGAAGCACATGAAAAATAAGAAGTATTCAGCTGAACCAGGTTCTCAGCATGAGGCAGAACCCTGTTGTGTTTGTCAGGAGGAGTACAAAGATGGAGATGATTTAGGATCACTGGATTGTGGGCATGATTACCATACGGAATGTATTAAGCAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACAGGGTTGGCAACATGA 2085 0.4441 MQGQRGTIGSLQETIEFDTSTTAAVDQHIFWNNMRNPAENHFALPPSDLNPSYPNPINHEWQNLSGWSLGEPSSSNTQNEVTNNEQKGELGLSSSISSGAIAAPRLEERRFEPNSTFSLDNVNTSSMYMRSSNSHLVPQNLNLNASLADSGTDNGYRVEHPPNLNKSSGPVNEHIQPSLGSGPFLLPSGTNGFLVEDTTDARPGCSLDTRRVSCKRKAVERSVGQSSGGGSSSYSQHTDGSAWNTLPTQDYGGNSFNRSASTEQVNARLGLSTGDGASESITWSNVAGGSESFHRNFRVRINPSSQQISVPPPAIPSGGVLRNSGVSSSSPMLQRFHSVDNSLDLRSAPPVVDTMVAQSQQPLVIHVPALPRNVQPFRWNGGSSSTNNHPPNTVICADRNNLPNEEPSSRSMPRNIVEYPMFVPATNLRNVVRNPARASNSANLSIPGNVGSSSRAASNSAVNPPSAPPAAAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNNYASFRGPSTSSGVNPFERQGDGEFGIQYSLRSLAAGGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFAGIADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKHMKNKKYSAEPGSQHEAEPCCVCQEEYKDGDDLGSLDCGHDYHTECIKQWLMHKNLCPICKTTGLAT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00352 694 MobiDBLite consensus disorder prediction 439 465 - -
Viun8g00352 694 SMART ring_2 647 687 IPR001841 -
Viun8g00352 694 MobiDBLite consensus disorder prediction 439 479 - -
Viun8g00352 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 691 IPR013083 -
Viun8g00352 694 MobiDBLite consensus disorder prediction 500 524 - -
Viun8g00352 694 FunFam E3 ubiquitin-protein ligase MBR2 615 692 - -
Viun8g00352 694 MobiDBLite consensus disorder prediction 500 525 - -
Viun8g00352 694 ProSiteProfiles Zinc finger RING-type profile. 647 688 IPR001841 -
Viun8g00352 694 MobiDBLite consensus disorder prediction 64 93 - -
Viun8g00352 694 MobiDBLite consensus disorder prediction 212 258 - -
Viun8g00352 694 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 210 692 IPR045191 GO:0061630
Viun8g00352 694 MobiDBLite consensus disorder prediction 224 258 - -
Viun8g00352 694 SUPERFAMILY RING/U-box 638 690 - -
Viun8g00352 694 Pfam Ring finger domain 647 688 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00352 Viun-Chr8 2231656 2237428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00352 1 694 C3H Transcription Factor Family AT2G15530 33.775 1.82e-82 274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00352 8 2231656 2237428 Viun8g00352 8 2231656 2237428 ECH
Viun8g00352 8 2231656 2237428 Viun9g03461 9 40792693 40799874 PCT