Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00351 ATGGCTGGTGGTGACATGCACCAACCACAACCCTCTCATGGCAGAACCTTCCCTCCTAATTCAGAAGATTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACTAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCAAACAACCTCAACAACAACAACAACAACATCCATGTTCCTTCCCCTCCCTCAACTTTTCATTTCTCTCACCCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACAACCATAATCACAACCCTGATTTCACTTCTGCTGAGAAGAGTGTGGAGGCAAGGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAACTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATGATGCCTCAGACTGGGTTGAACCTTGATGAGAATGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTCCCAAAGCAATGCAGCATCTCAGATCAGTCCCTTGTTGTACCCTCAGTGACAAGATTAGCCACCTCGAATGCACCATCCACTTTTCAGCCTCCTATTAAGGATACAACACTCTACGACAACATGCCCCAACTCTTTATGGATGCACCAAAGATCGGAAAGGACCCTTCTTCAGACTTGTCTTGA 891 0.4388 MAGGDMHQPQPSHGRTFPPNSEDFSTFFNQLLHNPPTLGMDPNHSASDFTPNNLNNNNNNIHVPSPPSTFHFSHPHHYIPATDANTFKQHNHNHNPDFTSAEKSVEARKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGELRPVMMPQTGLNLDENDGLQNSTSAIASSSNEESLVRHAFSFPKQCSISDQSLVVPSVTRLATSNAPSTFQPPIKDTTLYDNMPQLFMDAPKIGKDPSSDLS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00351 296 MobiDBLite consensus disorder prediction 13 33 - -
Viun8g00351 296 MobiDBLite consensus disorder prediction 120 134 - -
Viun8g00351 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Viun8g00351 296 MobiDBLite consensus disorder prediction 40 67 - -
Viun8g00351 296 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 14 266 IPR031066 -
Viun8g00351 296 MobiDBLite consensus disorder prediction 1 134 - -
Viun8g00351 296 Pfam Helix-loop-helix DNA-binding domain 126 172 IPR011598 GO:0046983
Viun8g00351 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 182 IPR036638 GO:0046983
Viun8g00351 296 Gene3D - 117 181 IPR036638 GO:0046983
Viun8g00351 296 SMART finulus 128 177 IPR011598 GO:0046983
Viun8g00351 296 CDD bHLH_AtPIF_like 122 184 IPR047265 -
Viun8g00351 296 FunFam Basic helix-loop-helix transcription factor 117 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00351 Viun-Chr8 2221729 2225545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00351 121 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 69.369 5.64e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g00351 HLH 2.7e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00351 8 2221729 2225545 Viun8g00351 8 2221729 2225545 ECH