Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00349 ATGGCTTTCCCTCAGCACCACTTCCAACGACACTACCAAACCCAGCAACAACAGCCACAGACCAAACCCTTCAGAAATCTGCAAGCAATCGATGCTCAGATGCCACAGCAGGTGGCGTTTTACAACCCTACTGATTTGCAAGATCAGTCCCAGCATCCACCCTACATACCTCCCTTTCATGTTGTTGGGTTTGCTCCGGGTCCTGTTCCTCCTGCTGATGGCAGTGATGGTGGAGTTGATTTGCAATTGCAATGGAATTATGGTTTGGAGCCAGAGAGGAAGAGACTTAAAGAACAGGACTTTTTGGAGAACAATTCTCAGATATCTTCTGTTGATTTTCTCCAACCACGATCAGTTTCAACTGGGTTAGGCTTGTCACTGGACAATACTCGCCTGACATCCACCGGAGACTCAGCTTTGTTGTCGCTCATTGGTGATGACATTGAGCGTGAGTTGCAGCAGCAGGATGTAGAGATAGATAGATTTCTCAAAGTGCAGGGTGAAAGACTGCGTCAATCAATCTTAGAAAAGGTTCAAGCAACACAGCTTCAGAGTGTCTCACTCATCGAGGACAAAGTACTTCAGAAACTTCGCGAGAAAGAAGCTGAGGTTGAAAGCATCAACAAGAGGAACATGGAACTCGAGGACCGAATGGAGCAGTTGACGGTGGAAGCTGGTTCTTGGCAGCAGCGAGCAAGATACAACGAAAACATGATTGCAGCTCTCAAGTTCAACCTTCAGCAAGCATATGTCCAGAGTAGAGATAGTAAAGAAGGATGTGGTGACAGTGAGGTTGATGACACAGCTTCTTGCTGCAATGGCCGTACCCTTGATTTTCATCTGCTTTCTAAGGAGAACACTGATATGAAAGAGATGATGACATGCAAAGCTTGCAGAGTGAACGAAGTGACCATGGTTTTGTTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTCTGTCCTCTATGTCAATCCTCCAAATTTATAAGCATGGAGGTCTACATGTAA 1026 0.4532 MAFPQHHFQRHYQTQQQQPQTKPFRNLQAIDAQMPQQVAFYNPTDLQDQSQHPPYIPPFHVVGFAPGPVPPADGSDGGVDLQLQWNYGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTRLTSTGDSALLSLIGDDIERELQQQDVEIDRFLKVQGERLRQSILEKVQATQLQSVSLIEDKVLQKLREKEAEVESINKRNMELEDRMEQLTVEAGSWQQRARYNENMIAALKFNLQQAYVQSRDSKEGCGDSEVDDTASCCNGRTLDFHLLSKENTDMKEMMTCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFISMEVYM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00349 341 PIRSF SBP1_RNase_bind 4 341 IPR017066 -
Viun8g00349 341 Coils Coil 190 231 - -
Viun8g00349 341 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 276 341 - -
Viun8g00349 341 MobiDBLite consensus disorder prediction 1 22 - -
Viun8g00349 341 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 93 339 IPR017066 -
Viun8g00349 341 CDD mRING-HC-C3HC5_CGRF1-like 294 329 - -
Viun8g00349 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 341 IPR013083 -
Viun8g00349 341 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Viun8g00349 341 MobiDBLite consensus disorder prediction 8 22 - -
Viun8g00349 341 Pfam Zinc finger, C3HC4 type (RING finger) 293 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00349 Viun-Chr8 2217652 2220480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00349 295 331 Miscellaneous Gene Families AT4G39050 45.946 4.52e-07 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00349 8 2217652 2220480 Viun8g00349 8 2217652 2220480 ECH