Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00347 ATGGCTCTTCTACTTGATAACTGTGAGAGCATTTTGCTCTCTTTGGACACACACAAATCTGTTCCTGCACCTTTCCTTACCAAAACATACCAACTTGTCGATGATCCTGCCACCGACCACATCGTATCTTGGGGCGAGGACGACGCCACCTTCGTTGTTTGGCGGCCCCCAGAGTTTGCCAGAGACCTTCTTCCCAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACCTACGGTTTCAGAAAGATCGTGCCTGATAGATGGGAGTTCGCAAACGAGTTCTTCAAGAAAGGAGAGAAGCACTTGTTGTGCGAGATCCACAGAAGGAAAACCCATCACCAGCATCAGCAACAACAAGTGCAGGGCATGCACCAGCAGCATCAGTTTGGACTCAACGTTCCCCCTTTCTTTCCCTTCCACAACAGACTCAGCGTGTCCCCTCCGCACGACTCGGACGAGTTAGCCAATTGGTGCGACTCGCCGCCCAGTGGAAACAACATCGTCAACAACAACAGCTACAACACTGTCGCTGCACTTTCTGAAGACAACGAAAGACTGAGGAGAAGCAACAACATGCTCATGTCAGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTTGTTCAGAACCATGTCAAACCCGTGGCTCCAAGCAACACTTACCCTTCTCTTCTACTATGCAGTAACAACAACAATAGCATATCATCACAACCCTCTCACATAAACAACGTTTCAACAGTTCAGAGACCGGTGAAACAGTTTGTGGGGTGTTATTCCAACAACAGTACTAGGCAAGCGCGTGCTGTGAACTCTCCCACTAACAGCTCCATCACCATCGTTGAAGATGAACCTAGCAGTAACAGCTGCAAGACCAAGCTTTTCGGAGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGTACGGATCTAACAATCTTCTAAGTTCAGAAACAAATAAAGCCCGTTTGGTTGTGGAAAACGATGAATTGTTTGGCTTAAATCTCATGCCCCCTTCAACTTGTTAG 1050 0.4752 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTHHQHQQQQVQGMHQQHQFGLNVPPFFPFHNRLSVSPPHDSDELANWCDSPPSGNNIVNNNSYNTVAALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYPSLLLCSNNNNSISSQPSHINNVSTVQRPVKQFVGCYSNNSTRQARAVNSPTNSSITIVEDEPSSNSCKTKLFGVSLQSKKRVHPEYGSNNLLSSETNKARLVVENDELFGLNLMPPSTC 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00347 349 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 273 IPR027725 -
Viun8g00347 349 Gene3D - 17 116 IPR036388 -
Viun8g00347 349 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g00347 349 FunFam Heat stress transcription factor B-4 17 115 - -
Viun8g00347 349 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g00347 349 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g00347 349 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g00347 349 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Viun8g00347 349 Coils Coil 181 201 - -
Viun8g00347 349 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g00347 349 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00347 Viun-Chr8 2190967 2192471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00347 1 348 HSF AT1G46264 54.960 1.02e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun8g00347 HSF_DNA-bind 4.9e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00347 8 2190967 2192471 Viun8g00347 8 2190967 2192471 ECH
Viun8g00347 8 2190967 2192471 Viun9g03462 9 40824240 40826101 PCT