Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00334 ATGTCTCCATTTCAGTTATTGTTGGTACTAGCAGTACTGCTTCTGTGCGTGTGGTCAGAGGCTGTTGCTAACGCAAATGATGATGAGATAAAAAGGAGCAACATAGACGAGTGCTCCATGTTGAAGTTCAAGATTGTTGTGAACATTGGAGCAGCCATAGAGTTGAATTCTCGAGTGGGAAAGGAACAGAAGATAGCAATGGAAGTTGCAATTGAAGATGTGAATCGACAAAGCTGCTACGAGCTTGCCTTGAACTACAGTTATAACATTCATCGCAACCCATCATCTCCCACTATGTTCGCTGCGGATCTTGCAAACAGCAAACAAGTGCAAGTTGTCGTAGGAACAAAACTCGATGTAGCAACGATGTTCCTCTCCATGGATGAAAACTCAAAGGATGTTCCTATCATATCTCTAACCTCAACAGCTACTCCAGAAATAGCTTCAATCCCATTGCCACACTTCATCCAAATGGGCCATGATGTCACCCTCCACATGCACTGCACCGCATCCATCATACACCAATTCCATTGGCGAAAGGTTACAGCAATTTACGAACACAACAACCTCTTTGCCTCTCATTCAGAGATTCTGACAACACTCTCTTACTCTCTGCGTCAGGTCAATGCTGAAATCGATCACCATGTAGCTTTTCCTTCAATGGCCCTTCTCTCAAACCCAACCGAGATCATAGAACAAGAGCTTACAAGGCTCAAGAGCAAGAGCAACAGGGTGTTCTTGCTTATTCAATCTTCCTTGGAGTTTGCCACTTTGCTTTTTGAGAAAGCAAAGGAAATGGGGATGATGGAAAAAGGGTCAGTGTGGATCATTGCAGATGATGTAGCCAACCACCTTGATTCCCTCGATTCTTCTGTCACTTCCAACATGCAAGGTGTCATGGGGTGCAAAACCAACTTCATGGAAGAGAGTGAAAGGTTCAAACGTTTCAAGTTCATGTTTAGGAGAAAGTTTGCACTGGAATACCCTGAGGAAGAAAGATTGCATCCGAGTGTGTTTTCTCTTAGGGCTTATGATGCTGTTTGGACCATTGCCAAAGCCTTGGAGAGCTCACAAGGAAACTTTTCCTTATCAGAAAGTATTTTGCACAGTGATCACGAGGGTCTTAGTGGGAAGATAAGGTTCAAAGGCAGAATGTTATCGGAACCACCAACGTTTAAGATTGTAAATGTTGTTGGAAAAGGTTACAAAGAGTTAGCATATTGGTCAATGGAGTCTGGTTTGAGTGAGAGCCTTGTTGAGCATAGTGCTGGTTCTGCTAGAATGCTTTTGAGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTACAATAGCAGTGAAGGGAAGCCTTTGAAAATTGGGGTTCCTGCTGTTGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGAGACTGAATGAAACTCAATTCAGTGGTTTCTCAATCAATGTGTTTGAATCAGTTGTGCAACGTCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACAAGTGAACAATAAGTACCTTGATGCTGCTGTGGGGGATATACAAGTGGTGGAACATAGATATGCATTTGCTGAATTCAGTCATCCATATGTTGAATCTGGCATAGCCATGGTGGTGAAAGTAAAGCCAGATAGATCCAAAGAAACTTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGCTAATGGCAGCAATGCATCTGTTCATAGCATTTGTAATCTGGTGCATTGAAGGTGAAAACAATTCGGAGTTGAAGAGTTTAGGGGCCATTCTCTGGTTTTCTGTCACCACGTTATTCTTCATACACAGAGAGCCTGTGAATAGCAGCTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTGATAGTGACTCAAAGTTTTACTGCGAGCCTTTCATCCATGATGACAGTGTCCCATCTTGAACCAGCTGTGCCTGATATACAAACACTGCTGAAGACAAATGCAATCATAGGATGCAACAAGAACACTTTCTTGGTCCATTACTTAGTTGATGAACTCAAATTCCAGCCACAGAATATCAGGGTCTTTGACTCCATCCATGATTTCCCAAGAGCCTTTGAGAACAAAGAAATTGTGGCTTCTTTCACCATTGCCCCTCATGCTGATGTCTTCCTAGCCACCTATTGCAAGGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTTGCATTTCCAAAAGGTTCAAGTTTGGCAATTGACATATCTCGAGCAACCTTAAAGGCCATAGAAAGTGGAGAAGTGCAAAAACTAGAAGAGAAAATGTTGTCTACAACTAATTGTGGATCCACAAACAACAACATACAAAACGAACAACTTGGTCCTCAACCTTTCTTTGGCTTGTTTGGCATTTGTGGAACCATTGCTGTCATAGGTTTATTGGCAACCATTGTTCACTTTGTTAAAAGAAAAGCACAAACATTTATGAACTACATATTATTGTCACAGTTACAAAGAGGAGTGCAGATAATCAAACTTTTTGGTCAAAAGCATCCATACAAGTACAGAAGGAGTGCACCTTCCCAAGATGCAAATAGCAGAGACAATGAGCTAGCTACACCAAGCATTAAGTTAACAATTAACTGCCACACCACTCATCAACTATAA 2703 0.4214 MSPFQLLLVLAVLLLCVWSEAVANANDDEIKRSNIDECSMLKFKIVVNIGAAIELNSRVGKEQKIAMEVAIEDVNRQSCYELALNYSYNIHRNPSSPTMFAADLANSKQVQVVVGTKLDVATMFLSMDENSKDVPIISLTSTATPEIASIPLPHFIQMGHDVTLHMHCTASIIHQFHWRKVTAIYEHNNLFASHSEILTTLSYSLRQVNAEIDHHVAFPSMALLSNPTEIIEQELTRLKSKSNRVFLLIQSSLEFATLLFEKAKEMGMMEKGSVWIIADDVANHLDSLDSSVTSNMQGVMGCKTNFMEESERFKRFKFMFRRKFALEYPEEERLHPSVFSLRAYDAVWTIAKALESSQGNFSLSESILHSDHEGLSGKIRFKGRMLSEPPTFKIVNVVGKGYKELAYWSMESGLSESLVEHSAGSARMLLSSVDWPGGLKTVPKGWVYNSSEGKPLKIGVPAVDPCPQFVNVSHDKRLNETQFSGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEQVNNKYLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLMAAMHLFIAFVIWCIEGENNSELKSLGAILWFSVTTLFFIHREPVNSSLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPAVPDIQTLLKTNAIIGCNKNTFLVHYLVDELKFQPQNIRVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSSLAIDISRATLKAIESGEVQKLEEKMLSTTNCGSTNNNIQNEQLGPQPFFGLFGICGTIAVIGLLATIVHFVKRKAQTFMNYILLSQLQRGVQIIKLFGQKHPYKYRRSAPSQDANSRDNELATPSIKLTINCHTTHQL 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00334 900 FunFam Glutamate receptor 165 334 - -
Viun8g00334 900 Pfam Receptor family ligand binding region 64 398 IPR001828 -
Viun8g00334 900 CDD PBP1_GABAb_receptor_plant 48 418 IPR044440 -
Viun8g00334 900 SUPERFAMILY Periplasmic binding protein-like II 435 786 - -
Viun8g00334 900 Gene3D - 752 786 - -
Viun8g00334 900 Gene3D - 162 335 - -
Viun8g00334 900 SMART GluR_14 457 790 IPR001320 GO:0015276|GO:0016020
Viun8g00334 900 Gene3D - 677 751 - -
Viun8g00334 900 CDD GluR_Plant 454 788 - -
Viun8g00334 900 Gene3D - 453 579 - -
Viun8g00334 900 Pfam Bacterial extracellular solute-binding proteins, family 3 480 787 IPR001638 -
Viun8g00334 900 FunFam Glutamate receptor 567 700 - -
Viun8g00334 900 Pfam Ligand-gated ion channel 788 818 IPR001320 GO:0015276|GO:0016020
Viun8g00334 900 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 861 IPR015683 -
Viun8g00334 900 PIRSF IGluLR_plant 2 365 IPR017103 -
Viun8g00334 900 PIRSF IGluLR_plant 355 891 IPR017103 -
Viun8g00334 900 Gene3D - 339 452 - -
Viun8g00334 900 SUPERFAMILY Periplasmic binding protein-like I 46 446 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00334 Viun-Chr8 2140047 2145232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00334 46 834 Ion Channels AT2G17260 30.095 2.43e-117 378