Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00315 ATGGCTGCCAGGAGTGAACAGCAATCAGTTCCTCTTTCGGTGCTCCTGAAGCGTGAATTGGCTCATGAGAAAATTGAGAATCCTGAGATTGCTCATGGTCAAGCTGGCCAAAGCAAGAAAGGGGAGGATTTAACCCTGGTGAAAACAGAATGCCAAAGGATGGTGGGGGATGGGGTGTCTACATATTCAGTTTTTGGGGTGTTTGATGGACACAATGGATCTGCTGCTGCTATTTATACTAAGGAGAATCTTCTAAATAATGTTTTAAGCGCAATTCCTCCAGATCTTAACAGAAGTGAGTGGGTAGCGGCATTGCCCAGGGCTTTAGTTGCTGGCTTTATAAAAACTGATAAAGATTTTCAAGAGAAAGGACAAAAATCTGGAACAACTGTTACCTTTGTGATTATAGAAGGTTGGGTTGTAACAGTTGCATCAGTTGGCGATTCCCGTTGTGTACTTGAATCTTCTGATGGTGAGATTTATTACTTGTCTGCAGATCACAGGCTAGACACGAATGAAGAGGAAAGGGTGCGGATCACCTCTAGCGGTGGTGAAGTTGGTCGGCTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCTTGTGTCTCTCACGATCTATTGGAGATATGGATGTTGGTGAATTTATTGTCCCTGTACCGCATGTAAAGCAAGTGAAGTTGTCCACTGCTGGAGGCCGGCTTGTTATCTGCAGTGATGGTGTTTGGGATTCTCTACCTGCAGAAGCAGCACTTGATTGTTGTCGTGGAATGCCACCTGATGCCGCAGCACCACATATTGTTAAAGAAGCTGTACAAGCAAAGGGACTTAGAGATGATACAACCTGCATCGTTGTTGATATATTACCTCAGGAAAAGCCATCTGTTTCTGCATCACATACAAAGAAGAAGGGAATGCTCAAGTCCATGTTTCGTAGAAAGTCTTCTGAATCATCTTCTTATAACGACAAAGATTACGTTGAGCCAGATGTTGTTGTGGAATTGTATGAAGAAGGATCTGCCATGCTTTCTGAGAGGTTCCATACTAAATATCCAATCTGCAACATGTTTAAGTTGTTTATGTGTGCAGTGTGTCAAGTAGAGATAAAACCTGGAGAGGGCATTTCAATACATGAGGGTGCACCCAACTCTGGAAAATTTCGTCCCTGGGATGGTCCTTTTCTGTGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATTAGGTAGAGTTAGCAGTGGAAGTGACGACTGA 1281 0.4411 MAARSEQQSVPLSVLLKRELAHEKIENPEIAHGQAGQSKKGEDLTLVKTECQRMVGDGVSTYSVFGVFDGHNGSAAAIYTKENLLNNVLSAIPPDLNRSEWVAALPRALVAGFIKTDKDFQEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSDGEIYYLSADHRLDTNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTAGGRLVICSDGVWDSLPAEAALDCCRGMPPDAAAPHIVKEAVQAKGLRDDTTCIVVDILPQEKPSVSASHTKKKGMLKSMFRRKSSESSSYNDKDYVEPDVVVELYEEGSAMLSERFHTKYPICNMFKLFMCAVCQVEIKPGEGISIHEGAPNSGKFRPWDGPFLCSSCQEKKEAMEGKRSLGRVSSGSDD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00315 426 SMART PP2C_4 21 291 IPR001932 -
Viun8g00315 426 FunFam probable protein phosphatase 2C 12 32 299 - -
Viun8g00315 426 SUPERFAMILY PP2C-like 33 293 IPR036457 -
Viun8g00315 426 Gene3D - 31 302 IPR036457 -
Viun8g00315 426 SMART PP2C_SIG_2 46 293 IPR001932 -
Viun8g00315 426 Pfam Protein phosphatase 2C 57 274 IPR001932 -
Viun8g00315 426 ProSiteProfiles PPM-type phosphatase domain profile. 27 293 IPR001932 -
Viun8g00315 426 CDD PP2Cc 36 293 IPR001932 -
Viun8g00315 426 PANTHER PROTEIN PHOSPHATASE 37 292 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00315 Viun-Chr8 1979274 1984290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00315 1 425 PP2C-type Phosphatase Gene Family AT1G47380 77.103 0.0 695
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00315 8 1979274 1984290 Viun8g00315 8 1979274 1984290 ECH
Viun8g00315 8 1979274 1984290 Viun9g03500 9 40957417 40962680 PCT