Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00280 ATGAGAAGAACCAAACAATGTTCTTCTTCATTCTCTTCTCATTCTTCTGCTTCTGAATCCAATCCTAGCAATAATCATAATAATAACAACAATTGTGTTAGAATAAGAGGGGCATGGAGTGCGGAAGAAGATAGGATTCTCACTGGGCTTGTGGAGGCCCATGGGCCGAGAAACTGGGCCTTGATAAGCCGACACGTAAAGGGCCGGTCCGGGAAGTCCTGCAGGCTTCGGTGGTGCAACCAGCTGAGTCCCGCCGTGGAGCACCGACCCTTCACCACGCGCGAGGACGCGCTTATCTTGCACGCGCACGACCGGTTAGGGAACAAGTGGGCCGCCATTGCGAGAATGCTTCCGGGCCGGACCGATAACGCCGTTAAGAACCACTGGAACGCCACGCTCAAGCGCAGGGCCTCCCAACGACGTCGTTTTTGGGATGAACCGTTGACTGCGCTGACTCTGGCGCCGCCGGGAAGCGGCGGCGGTGGCGGAGGATGGACGGCGGGGTTCCGGGATGTGGTTGCGAGGGAAGTGCGAGAATATGTGTCTTTCTCGTTTTCCGATAAGTTGGGCTCTAACGAGAAATTATCCAAATACTAA 597 0.5494 MRRTKQCSSSFSSHSSASESNPSNNHNNNNNCVRIRGAWSAEEDRILTGLVEAHGPRNWALISRHVKGRSGKSCRLRWCNQLSPAVEHRPFTTREDALILHAHDRLGNKWAAIARMLPGRTDNAVKNHWNATLKRRASQRRRFWDEPLTALTLAPPGSGGGGGGWTAGFRDVVAREVREYVSFSFSDKLGSNEKLSKY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00280 198 SUPERFAMILY Homeodomain-like 35 129 IPR009057 -
Viun8g00280 198 CDD SANT 90 133 IPR001005 -
Viun8g00280 198 Gene3D - 35 87 - -
Viun8g00280 198 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Viun8g00280 198 CDD SANT 38 80 IPR001005 -
Viun8g00280 198 FunFam MYB transcription factor 36 87 - -
Viun8g00280 198 Gene3D - 89 146 - -
Viun8g00280 198 PANTHER MYB PROTEIN-RELATED 36 142 - -
Viun8g00280 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 86 IPR017930 -
Viun8g00280 198 Pfam Myb-like DNA-binding domain 36 82 IPR001005 -
Viun8g00280 198 Pfam Myb-like DNA-binding domain 90 130 IPR001005 -
Viun8g00280 198 SMART sant 87 135 IPR001005 -
Viun8g00280 198 SMART sant 35 84 IPR001005 -
Viun8g00280 198 MobiDBLite consensus disorder prediction 1 30 - -
Viun8g00280 198 ProSiteProfiles Myb-like domain profile. 36 82 IPR001005 -
Viun8g00280 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 137 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00280 Viun-Chr8 1807482 1808265 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g00280 Myb_DNA-binding 2.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00280 8 1807482 1808265 Viun8g00280 8 1807482 1808265 ECH