Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00270 ATGGGGTGTGACTGTGGGGGGAAGTTAAATTTGAGAAAGCCTCATTTTTATGAGGTTTATTCCTCTGCCTTCAGCTCTCACAGACTGAAAATTCCAGATGGATTTGTGTGTCGGATGGAGGGAAGGACGCACGGCTCATTTTCATTGACTGGTCCCAGTGGAAATGTATGGACAGTGCAATTACTTAAGCAGGACAATGATCTTTTCTTCCATCACGGATGGTCGTCATTTGTGGTGGATCATAGTCTAGAATGTGGTGACCTCTTGGTTTTCAGATACGAAGGTCACTTGCATTTTACTGTCCAAGTATTTGATAAGGATGCATGTGAGAAAGAGGCAGCATTTACGTCTGAATGTAGTCAAAGTTCGAGTGACTTTGAGGAAATTGTTGGACAGAAAAGAGACGCGAAGGAGAGTTCTTCTTTGGATATTGCATTTGATGGTGTTGCAAAGAAAAGGAGAGGTTGTAAATATGACAACCGGGAACTTGAACCAGGGTTTGTTGGTAAAGAACTATTGCGGTATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAAACTGAAGAAACCTCTAAAGCTTGTTTGGCTAGTAATAACCTTGTGCCTTTTCACATGGACAATCGAAATGAAGGGGCTGCCATCCTGTACAGAAGTGGAAAGGAAGATGGTCATTATTTTCTTGGTGGAGTTTCATTATCAAATGTATCAGCACAAGATGAGAAAAAAGTTGCTCAGTCTTTTACTTCCAATTTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATATCAGTTTTCAATGGCACACCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAGCATTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTCGTTCGTGGTAATAACATTAAGATTGGAGATATCTGTATTTTTGAGCTTGTGCAAGAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAAAGATGATCTAGACGACCAGGTTGGAAGAGCGAATGCAGGACATGCTGGAACTACCAGATATATGCCAATGAATGCTAAAGTAAACTCAAAGTCCATAAGAAAAGTTGATCTATCAGATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGCAGAGCTTCAAATACTTCTAAGAAGATGGGCCTGTGCTCTCAGTCCAAAGCTGCCCATAAAAAGTTGGCTAATCCTAGGAGACATCGGGTTGAAGATGAACTTAGCTCACAGGCTAAATCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCCAGTTTTGTTAAAATCATGAAAATGTTCAATGTCAGTGGCTCATACACTCTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTCATACTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTTCCAGATGCAAAAGGGCGAACAGTTCATACCTTCTGTGGGGGTTGGATGGCCTTTGTTCGTGACAATGACATAAATTTTGGAGACACGTGCATTTTTGAATTGGTTACTCAATGTGAGATGCAGGTGTACATATCTGGGGTCGGAAAGGAAGGGCCTGAACATCAAAATGGTCACTTGAAACCTGACAGGTTATCTATCCTTCCATCTTCATGCTAA 1782 0.4068 MGCDCGGKLNLRKPHFYEVYSSAFSSHRLKIPDGFVCRMEGRTHGSFSLTGPSGNVWTVQLLKQDNDLFFHHGWSSFVVDHSLECGDLLVFRYEGHLHFTVQVFDKDACEKEAAFTSECSQSSSDFEEIVGQKRDAKESSSLDIAFDGVAKKRRGCKYDNRELEPGFVGKELLRYEVVRPIRMFRETEETSKACLASNNLVPFHMDNRNEGAAILYRSGKEDGHYFLGGVSLSNVSAQDEKKVAQSFTSNFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVQECELRVHIAGVGKDDLDDQVGRANAGHAGTTRYMPMNAKVNSKSIRKVDLSDKKWPKIGQETVLSIDLKKSGRASNTSKKMGLCSQSKAAHKKLANPRRHRVEDELSSQAKSGLRMLFALDEQRVAQAFSSPFPSFVKIMKMFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVTQCEMQVYISGVGKEGPEHQNGHLKPDRLSILPSSC 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00270 593 CDD B3_DNA 21 105 IPR003340 GO:0003677
Viun8g00270 593 Gene3D - 234 349 IPR015300 -
Viun8g00270 593 Gene3D - 459 569 IPR015300 -
Viun8g00270 593 Pfam B3 DNA binding domain 474 561 IPR003340 GO:0003677
Viun8g00270 593 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Viun8g00270 593 Pfam B3 DNA binding domain 254 346 IPR003340 GO:0003677
Viun8g00270 593 Gene3D - 8 109 IPR015300 -
Viun8g00270 593 CDD B3_DNA 472 566 IPR003340 GO:0003677
Viun8g00270 593 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Viun8g00270 593 CDD B3_DNA 252 346 IPR003340 GO:0003677
Viun8g00270 593 SUPERFAMILY DNA-binding pseudobarrel domain 467 568 IPR015300 -
Viun8g00270 593 SUPERFAMILY DNA-binding pseudobarrel domain 247 348 IPR015300 -
Viun8g00270 593 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Viun8g00270 593 ProSiteProfiles B3 DNA-binding domain profile. 474 570 IPR003340 GO:0003677
Viun8g00270 593 SMART B3_2 474 570 IPR003340 GO:0003677
Viun8g00270 593 SMART B3_2 16 107 IPR003340 GO:0003677
Viun8g00270 593 SMART B3_2 254 352 IPR003340 GO:0003677
Viun8g00270 593 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Viun8g00270 593 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 352 IPR044837 -
Viun8g00270 593 MobiDBLite consensus disorder prediction 415 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00270 Viun-Chr8 1744605 1748472 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun8g00270 B3 1.8e-12 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00270 8 1744605 1748472 Viun8g00270 8 1744605 1748472 ECH