Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00261 ATGTTTGGTGAAAGCTTTCCCCGAACACAGTACATGCATTCGGAGCCCAGAATGTCGAATTCGGAGGCTTTAACCGACGACGAGTACACAATGCGGAGTAGCAGTTCGGCGTCGCCGATGAGTCCTTATTTCTACGACCAGGGTAGGCTTAGCGGCGAGGGTTCCCCGATGATGATGTCGCCGTGGAACAATAACGCCGGTTCGCCGTTTCAGAAGGTGGAGTGGGTTCCGGGCGAGGACGGGAGCTTGCCGCAGAACGCGCTCGTGGGTTCTCTTGTCCGAGAGGAGGGACACATATACTCGCTGGCGGCTTCCGGTGACCTCTTGTACACGGGGTCCGACAGCAAGAACATTCGTGTGTGGAAGAACCTGCAGGAGTATTCTGGGTTCAAATCCAACAGCGGATTGGTCAAAACCATAATCCTGTCGGGACAGAAAATCTTCACGGGGCACCAGGACGGCAAAATCCGCGTCTGGAAGGTCTCGCCCAAGAACCCGAGCGTGCACAAACGCGCCGGCACGTTGCCCACGCTTAAAGACATCTTCAAGAGCTCCATTAAACCCAGCAACTACGTTGAGGTTCGGCGACACAAAACGGCGTTATGGATAAAACATTCGGACGCCGTTTCGTGCTTGAGTCTCTCCGATAACAAGTTGTATCTATACTCTGCGTCTTGGGACAGAACGATCAAGGTGTGGAGGATCGCCGACTCCAAATGCCTGGAGTCAATCCACGCGCACGACGACGCCGTCAACGCGGTGGTGTGCGGCGAAGAAGGGATGGTGTTTTCGGGGTCGGCGGACGGCACGGTGAAGGTGTGGCGGCGGGAGCCGCGAGGGAAGGGGCTGAAACACACGGCGGTGAAAACGCTGCTGAAGCAGGAGTGCGCGGTGACGGCGCTGGCGGTGGACGCGGATGCTTCCATGGTGTACTGCGGCGCCTCTGATGGGCTGGTGAACTTCTGGGAGCGCGAGAAGGGTTACGCGCACGGCGGCGTCCTGAAGGGCCACAAGCTCGCCGTGCTGTGCCTCACTTCGGCGGGGACGTTAGTGTTCAGCGGGTCCGCAGATAAGACGATATGCGTGTGGAGAAGAGAAGGTGTGATCCACACGTGCGTGTCGGTTCTCACGGGTCACGACGGTCCCGTGAAGTGCCTGGCCGTGGAGGAGGACCGCGAAAACGCCGGCGGCAGAGACAAGCGTTGGGTTTTGTATAGTGGGAGTTTGGACAAATCGGTTAAGGTTTGGAGCGTGTCGGAATCGATGAACAATTATCAGTCGCAGCATCAGCGCATGGTTTCCGATGCGGAGTCGCTGCCGTCCGTCTCCGAGAGTAGCCTCTCATCTTCGGGCTGGGCCAGTGGGAGAAACTGA 1374 0.5793 MFGESFPRTQYMHSEPRMSNSEALTDDEYTMRSSSSASPMSPYFYDQGRLSGEGSPMMMSPWNNNAGSPFQKVEWVPGEDGSLPQNALVGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYSGFKSNSGLVKTIILSGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIKHSDAVSCLSLSDNKLYLYSASWDRTIKVWRIADSKCLESIHAHDDAVNAVVCGEEGMVFSGSADGTVKVWRREPRGKGLKHTAVKTLLKQECAVTALAVDADASMVYCGASDGLVNFWEREKGYAHGGVLKGHKLAVLCLTSAGTLVFSGSADKTICVWRREGVIHTCVSVLTGHDGPVKCLAVEEDRENAGGRDKRWVLYSGSLDKSVKVWSVSESMNNYQSQHQRMVSDAESLPSVSESSLSSSGWASGRN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00261 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 363 IPR001680 GO:0005515
Viun8g00261 457 MobiDBLite consensus disorder prediction 1 42 - -
Viun8g00261 457 Gene3D - 283 456 IPR015943 GO:0005515
Viun8g00261 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 274 - -
Viun8g00261 457 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 26 421 IPR045182 -
Viun8g00261 457 FunFam BnaA09g28200D protein 192 279 - -
Viun8g00261 457 Gene3D - 76 192 IPR015943 GO:0005515
Viun8g00261 457 MobiDBLite consensus disorder prediction 12 42 - -
Viun8g00261 457 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Viun8g00261 457 PRINTS G protein beta WD-40 repeat signature 221 235 IPR020472 -
Viun8g00261 457 PRINTS G protein beta WD-40 repeat signature 404 418 IPR020472 -
Viun8g00261 457 SMART WD40_4 85 122 IPR001680 GO:0005515
Viun8g00261 457 SMART WD40_4 237 275 IPR001680 GO:0005515
Viun8g00261 457 SMART WD40_4 284 323 IPR001680 GO:0005515
Viun8g00261 457 SMART WD40_4 369 417 IPR001680 GO:0005515
Viun8g00261 457 SMART WD40_4 123 160 IPR001680 GO:0005515
Viun8g00261 457 SMART WD40_4 195 234 IPR001680 GO:0005515
Viun8g00261 457 SMART WD40_4 327 364 IPR001680 GO:0005515
Viun8g00261 457 Pfam WD domain, G-beta repeat 371 417 IPR001680 GO:0005515
Viun8g00261 457 Pfam WD domain, G-beta repeat 96 122 IPR001680 GO:0005515
Viun8g00261 457 Pfam WD domain, G-beta repeat 205 233 IPR001680 GO:0005515
Viun8g00261 457 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515
Viun8g00261 457 Pfam WD domain, G-beta repeat 332 363 IPR001680 GO:0005515
Viun8g00261 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Viun8g00261 457 SUPERFAMILY WD40 repeat-like 90 427 IPR036322 GO:0005515
Viun8g00261 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 235 - -
Viun8g00261 457 MobiDBLite consensus disorder prediction 427 457 - -
Viun8g00261 457 Gene3D - 193 282 IPR015943 GO:0005515
Viun8g00261 457 CDD WD40 96 417 - -
Viun8g00261 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 426 IPR001680 GO:0005515
Viun8g00261 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 274 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00261 Viun-Chr8 1680629 1682928 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02139 9 31107045 31111197 Viun8g00261 8 1680629 1682928 PCT