Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00251 ATGGGTTGGCTTAGCAGAATTTTCAAAGGGACTGAGCAGAAGATTTCGGAGGGCCATTATAGTAAAGAGGATGCTGGTTATTATTTGCCATCGACTTCGGGGGTAACAACAAATGATGTTTGGAACCAGAACGAGAATGAGGATATAGATCGTGCTATTGCACTGTCGCTGGTGGAAGAGAGCGAGAGAACACACAATGTAAATGACAACAGATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTTTAGAAGAAAGTCTAAACGTGGACTCTCCTCCCAGATATGGAAATGAAAATGCGTTTCAACCAATTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATACTGAGATTGGTTATGGGCGATATCTTAATTGCTTGAACGCATTCTGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGTTATAAGGAAAGCTACCACCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAGAAATATTGCCCTTCTCATGAACATGACGGTACTCCACGATGTTGCAGTTGTGAGCGAATGGAGTCGCAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGTTTAGAGTGTCTGGATTCTTCTATCATGGATACAAATGAATGCCAACCCCTTTATGCTGATATACAAAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTACTATTGGTTGAAAGACAAGCATTGAATGAAGCAAGAGAGGGAGATAAGAATGGACATTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCACCACTTTCAGACGACCTAGATTTGGGACAGGAAATGGAGCAATGGACATGAGAGCACAGCAATACAGGATGACTCCACATTGTGATGTGACGGCTATTCTCATTTTATATGGTCTTCCAAGATTGCTCACTGGATCCATCCTAGCCCATGAGATGATGCATGCCTGGCTTCGACTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTAGTTCTGCATCAGGCAGCAACTTTGTATCAGCTTCATCCTCATCTGCATCACACACATCTAAAAAGGGTAAAAGACCTCAGTTTGAGAGAAAGCTTGGGGAGTTCTTCAAACACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTACAAAGGACCCTTCACCACATCAAGATGACGGGGACTTTTCCATATTAA 1425 0.4344 MGWLSRIFKGTEQKISEGHYSKEDAGYYLPSTSGVTTNDVWNQNENEDIDRAIALSLVEESERTHNVNDNRSQLEEDEQLARALEESLNVDSPPRYGNENAFQPIQYFPMGSRICAGCYTEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMESQEAGYIALKDGRKLCLECLDSSIMDTNECQPLYADIQRFYESLNMKLDQQIPLLLVERQALNEAREGDKNGHYHMPETRGLCLSEELTTFRRPRFGTGNGAMDMRAQQYRMTPHCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSASSSSASHTSKKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIKMTGTFPY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00251 474 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 140 - -
Viun8g00251 474 SMART lim_4 114 166 IPR001781 -
Viun8g00251 474 SMART uim 44 63 IPR003903 -
Viun8g00251 474 SMART uim 75 94 IPR003903 -
Viun8g00251 474 Gene3D Cysteine Rich Protein 106 173 - -
Viun8g00251 474 Pfam Protein DA1 265 469 IPR022087 -
Viun8g00251 474 PANTHER PROTEIN DA1-RELATED 2 3 474 IPR045218 -
Viun8g00251 474 Coils Coil 67 87 - -
Viun8g00251 474 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Viun8g00251 474 FunFam Protein DA1-related 1 109 168 - -
Viun8g00251 474 CDD LIM_DA1 115 167 - -
Viun8g00251 474 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 63 IPR003903 -
Viun8g00251 474 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 75 94 IPR003903 -
Viun8g00251 474 Pfam LIM domain 115 169 IPR001781 -
Viun8g00251 474 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 196 - -
Viun8g00251 474 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00251 Viun-Chr8 1582626 1588851 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g00251 DA1-like 6.5e-94 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00251 8 1582626 1588851 Viun8g00251 8 1582626 1588851 ECH