Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00245 ATGTCTCTTCTCCTCCACCTTCTCCTTTTTCTCTTCTTAGGTAATGTAGCATCTGCCACAGTATTTTCTCTAGAGAATCATTGCAGTTACACAGTTTGGCCGGGGACACTTTCCGGCAACGGCGCCGGCATTCTCGGTTCTGGGGGTTTCGCCCTGCCGCCGGGTTCGTCGGTCCAGCTCACGGCGCCTTCCGGCTGGTCCGGCCGCTTCTGGGCCCGGACCGGCTGCTCATTTGACGACTCCGGCGCCGGGAAATGCGCCACCGGAGACTGTGCCGGAGGACTAAAATGCACCGGCGGAGGAGTCCCGCCGGTGACGCTGGTGGAGTTCACGACCGGAAGCTCCGGCAACGGCAACAAGGACTTCTACGACGTGAGTCTGGTGGACGGTTACAACGTGGGAATGGGAGTGAGGGCTACCGGGGGAACCGGTGACTGCAAGTACGCGGGGTGCGTGGCGGACCTGAACGGCGCGTGTCCGGCGGAGCTTCAGGTTAGAGACGGCGGCGGCGCGGTGGTGGCGTGCAAGAGCGCGTGCGCGGCGTTTAACACGGCGGAATTTTGCTGCACCGGCGAGCACGGGTCGCCGCAAACGTGTTCGCCGACACATTATTCGGAGATTTTCAAGAGCGCGTGTCCAACAGCTTACAGTTACGCATACGATGATGCTTCCAGCACTTTCACATGTTCACAATCTGATTACGTTATTACTTTCTGTTCAATGGGATCATCATCTTAA 738 0.5881 MSLLLHLLLFLFLGNVASATVFSLENHCSYTVWPGTLSGNGAGILGSGGFALPPGSSVQLTAPSGWSGRFWARTGCSFDDSGAGKCATGDCAGGLKCTGGGVPPVTLVEFTTGSSGNGNKDFYDVSLVDGYNVGMGVRATGGTGDCKYAGCVADLNGACPAELQVRDGGGAVVACKSACAAFNTAEFCCTGEHGSPQTCSPTHYSEIFKSACPTAYSYAYDDASSTFTCSQSDYVITFCSMGSSS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00245 245 CDD TLP-PA 21 239 - -
Viun8g00245 245 SMART tha2 22 240 IPR001938 -
Viun8g00245 245 Pfam Thaumatin family 26 239 IPR001938 -
Viun8g00245 245 PRINTS Pathogenesis-related protein signature 82 111 IPR001938 -
Viun8g00245 245 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Viun8g00245 245 PRINTS Pathogenesis-related protein signature 21 33 IPR001938 -
Viun8g00245 245 PRINTS Pathogenesis-related protein signature 69 80 IPR001938 -
Viun8g00245 245 PIRSF PR5 1 245 IPR001938 -
Viun8g00245 245 SUPERFAMILY Osmotin, thaumatin-like protein 21 239 IPR037176 -
Viun8g00245 245 Gene3D Thaumatin 20 239 IPR037176 -
Viun8g00245 245 FunFam Thaumatin-like protein 1a 20 240 - -
Viun8g00245 245 PANTHER OS03G0233200 PROTEIN 6 239 IPR001938 -
Viun8g00245 245 ProSiteProfiles Thaumatin family profile. 19 239 IPR001938 -
Viun8g00245 245 ProSitePatterns Thaumatin family signature. 82 97 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00245 Viun-Chr8 1552039 1553185 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00245 8 1552039 1553185 Viun8g00245 8 1552039 1553185 ECH