Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00243 ATGGAGTCCATGGTTCGGTGCTATAGTTCGTGCGCGTTATTCGGATTTCGTTGCAACCTTCGATTCGCCGTTGTTGTTTTTGAGATTATATTGATATTGGCATGGTTGGAAGTCTATAATGCAAAGCTCCCAGAACACCGATTTCATGGGGGAGGTTTGGAGGGGAGGAGTGAGAACATTGCCTCACACTCTTGCATACATGACCAGATACTTGAACAGAGAAAGCGACCTGGTCGAAAGGTGTATTCCGTTACCCCACAGGTTTACAAGCCCGGTCTTTCGAAACACCTCCAGCTTAAAGGTAGAGCGTTGCTTGGTATATCAACATCATCAGAGCTTCTAGGGATTGAAAAGCAACCTATTAGGATATATCTAAATTATGATGCAGTTGGTCACTCCCCTGACAGGGATTGCCAAAAGATTGGTGATATTGTGAAGCTTGGGGAGCCTGCCATAACTTCTCTTCCTGGTTTGCCTTCCTGTAATCCTCTTGCTGATCCTCCTGTCTTTGGTGATTGTTGGTATAACTGCACTTCTGAAGATATCTCAGGAGAGGACAAAAAACGTCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTCGAAGGGTATTGTCTGTGGAGCCTGTGAAGGGGAACCTGCGGTTAAGTGGATACTCTGCATGTGGACAAGATGGAGGTGTGCAGCTCCCTCATGCATATGTGGAAGAGGGAGTCTCTGATGCCGACTTGGTTCTCTTGGTGACTACAAGACCTACTACCGGGAATACACTTGCTTGGGCTGTGGCATGTGAACGGGACCAATGGGGTCGTGCTATAGCTGGACATGTTAATGTTGCTCCACGTCATTTGACTGCTGAGGCGGAGACTTTGCTATCAGCTACTTTGATACATGAGGTTATGCATGTTCTTGGTTTTGATCCACATGCCTTTGCTCATTTTAGAGATGAAAGGAAAAGACGCCTTGACAAGGTAACTGAACAAGTTATGGATGAAAAGATTGGGCGGATGGTAACACGAGTGGTGCTTCCACGTGTTGTTATGCACTCCCGGCATCATTATGCGGCATTTTCAGGAAATTTTACTGGCTTAGAGCTGGAAGATGGTGGAGGACGTGGCACATCAGGGTCTCACTGGGAAAAGAGGCTTCTGATGAATGAGATCATGACTGGTTCTGTGGATACAAGATCTGTAGTTTCAAAAATGACTCTAGCCCTATTAGAAGACAGTGGATGGTACAAAGCCAATTATAGCATGGCAGACCAACTTGATTGGGGTCGGAACCAGGGTACTGAGTTTGTTACCTCCCCTTGCAATCTATGGAAAGGGGCCTATCATTGCAACACAACACAATTCTCAGGTTGTACGTATAACAGAGAGGCAGAGGGTTACTGCCCAATTCTAACCTACAGCGGAGATCTTCCTCAGTCGGCTCGGTATTTTCCTCAAGCTAATAAAGGTGGACAATCCTCATTGGCTGATTATTGCACTTATTTTGTTGCATACTCTGACGGATCATGTACAGACACTAGCAGTGCACGGGCACCTGATAGCATGCTAGGTGAAGTTCGAGGAAGTAACTCCAGGTGCATGGCCTCATCGTTGGTGCGCACAGGATTTGTAAGGGGTTCTCTGACCCAGGGAAATGGCTGTTATCAGCACAGGTGTATCAACAATTCTCTAGAGGTTGCTGTGGATGGTGTCTGGAAAGTGTGTCCTCGGGCTGGTGGACCCATTCAGTTCCCTGGTTTTAATGGTGAATTAATCTGCCCTGCATATCATGAGCTCTGTAACACGGATCCTGTGGTTGTCTCTGGGCAATGTCCCAGTGCATGTAATTTCAATGGAGATTGTGTTGATGGAAGGTGTCACTGCTTTCTTGGATTTCATGGTCATGATTGCAGTGGACGTTACTGTCCCAGCAATTGCACTGGCAAGGGGGTGTGCCTCACCAGTGGAATATGTGAATGTAAAACTGGCTATACTGGCATTGACTGTTCCACTGCTGTTTGCGATGAGCAGTGCAGTCTTCATGGTGGAGTTTGTGATAATGGAGTTTGTGAATTCCGTTGTTCTGACTATGCGGGATATACTTGCCAGAACAGCTCCAGGCTCATCTCCAGTCTTTCAATTTGCAGAAATGTGCTGGGAAATGATATTTCCGGACAACATTGTGCACCCAGTGAACCTAGCATACAACAGCAGCTAGAAGAAGTGGTTGTGATGCCCAACTACCATAGATTATTCCCTGGTGGTGCTAGGAAACTATTTAATATATTTGGCAGTACGTACTGTGATGAGGCAGCCAAAAGGCTTGCCTGTTGGATCTCAATCCAGAAGTGTGAGAAGGATGGAGACAACAGGCTACGAGTATGTCATTCCGCATGTCAGGCTTACAATCTAGCATGTGGAGCTTCACTGGACTGCGGTGACCAAACCCTTTTCAGCAGCGAGGGGGAGAGGCAGGGTCAGTGCACTGGCTCTGGTGAGATGAAATTGTCATGGTTTAATCGACTAAGAAATAGTTTTTCTTTGAGAAATAGTTCCTCAAAAGTGATATCTGTAAGATATAGGCAGCTTTAG 2586 0.464 MESMVRCYSSCALFGFRCNLRFAVVVFEIILILAWLEVYNAKLPEHRFHGGGLEGRSENIASHSCIHDQILEQRKRPGRKVYSVTPQVYKPGLSKHLQLKGRALLGISTSSELLGIEKQPIRIYLNYDAVGHSPDRDCQKIGDIVKLGEPAITSLPGLPSCNPLADPPVFGDCWYNCTSEDISGEDKKRRLRKALGQTADWFRRVLSVEPVKGNLRLSGYSACGQDGGVQLPHAYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRLDKVTEQVMDEKIGRMVTRVVLPRVVMHSRHHYAAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADQLDWGRNQGTEFVTSPCNLWKGAYHCNTTQFSGCTYNREAEGYCPILTYSGDLPQSARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTSSARAPDSMLGEVRGSNSRCMASSLVRTGFVRGSLTQGNGCYQHRCINNSLEVAVDGVWKVCPRAGGPIQFPGFNGELICPAYHELCNTDPVVVSGQCPSACNFNGDCVDGRCHCFLGFHGHDCSGRYCPSNCTGKGVCLTSGICECKTGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSRLISSLSICRNVLGNDISGQHCAPSEPSIQQQLEEVVVMPNYHRLFPGGARKLFNIFGSTYCDEAAKRLACWISIQKCEKDGDNRLRVCHSACQAYNLACGASLDCGDQTLFSSEGERQGQCTGSGEMKLSWFNRLRNSFSLRNSSSKVISVRYRQL 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00243 861 Pfam EGF-like domain 640 667 IPR013111 -
Viun8g00243 861 ProSitePatterns EGF-like domain signature 2. 656 667 IPR000742 -
Viun8g00243 861 Gene3D - 117 304 - -
Viun8g00243 861 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 119 602 - -
Viun8g00243 861 FunFam Peptidase M8, leishmanolysin 115 304 - -
Viun8g00243 861 FunFam leishmanolysin-like peptidase isoform X2 442 501 - -
Viun8g00243 861 Gene3D Leishmanolysin domain 4 503 596 - -
Viun8g00243 861 FunFam leishmanolysin-like isoform X2 503 598 - -
Viun8g00243 861 FunFam leishmanolysin-like peptidase isoform X2 315 439 - -
Viun8g00243 861 Gene3D Leishmanolysin domain 3 443 501 - -
Viun8g00243 861 PRINTS Leishmanolysin (M8) metalloprotease family signature 249 278 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Viun8g00243 861 PRINTS Leishmanolysin (M8) metalloprotease family signature 402 431 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Viun8g00243 861 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 58 820 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Viun8g00243 861 Gene3D Laminin 640 670 - -
Viun8g00243 861 Gene3D Leishmanolysin , domain 2 314 439 - -
Viun8g00243 861 ProSitePatterns EGF-like domain signature 1. 656 667 IPR000742 -
Viun8g00243 861 ProSiteProfiles EGF-like domain profile. 636 668 IPR000742 -
Viun8g00243 861 Pfam Leishmanolysin 175 600 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Viun8g00243 861 Gene3D - 597 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00243 Viun-Chr8 1535786 1543921 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00243 8 1535786 1543921 Viun8g00243 8 1535786 1543921 ECH
Viun8g00243 8 1535786 1543921 Viun9g03550 9 41264699 41273316 PCT