Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00196 ATGCCATTCAGAAGCATACTGCGTGAGCTCAAGGAGATTGGAGAGGGTATCAGCAACATGTATAGAAGAGGGGGAGAGGGAAAACATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCTCTACCACCATCCTCCTCTTCCTCCTCCTCCTCATCTTCTTCTTCCTCTTCCTCTTCTTCATCACAGAGTCGTTGGGCTAACTTACCACCAGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACATCATGGCCTGCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTGAAGACACCAGAACAGTGTGGTTTGCTCACTTTTCCTATATCACTGAAGCAGCCTGGTCCAAGAGACTCACCAATCCAGTGTTTTATTAGGAGAGAAAGAGTGTCTTCAACATATTGTTTATATCTCGGCCTGAGCCCTGCCCTTTCTGGTGATATGAGCAAACTGCTACTGGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCAGATGATTTCTCTCGAACAAGCAACACTTACATTGGAAAGTTGAGGTCTAATTTTCTTGGCACCAAGTTCATGATCCTGGATGGCGAGTCCCCACATGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCCAAGGTTGCTGCTGCTGCTGCTAACTACAAAGTGGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGACCAAGGCGAATGCGGTGTACGATGCACTTGATTCCCATATCTGCAATCCAAGAAGGAGGAAGTGCTCCAACTCCTTTGAAGTTTACAAATTATCTTAATGAGCATGTATCTGTCACCACCCCCACCACCACCACCACCTCAGACTCAAAAGGAAGTAAGTCAGAAGTTGTTGAGTTTGACACAAATGAGACTGAAAGTACTCAAGAATCAAGCCAGAGGGCAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCGAGATGGCATGAACAACTGCAATGCTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCTGAACATGAAAAAGTGATTCTACAATTTGGAAAAATCGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1317 0.451 MPFRSILRELKEIGEGISNMYRRGGEGKHVHRHGKSHIAPECSLPPSSSSSSSSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACSSVCRLWREITKDVVKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRTSNTYIGKLRSNFLGTKFMILDGESPHDSSLPLNCKLQQRVHLKQVLPKVAAAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGSAPTPLKFTNYLNEHVSVTTPTTTTTSDSKGSKSEVVEFDTNETESTQESSQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEHEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00196 438 ProSitePatterns Tub family signature 2. 423 438 IPR018066 -
Viun8g00196 438 SUPERFAMILY F-box domain 56 112 IPR036047 GO:0005515
Viun8g00196 438 MobiDBLite consensus disorder prediction 307 345 - -
Viun8g00196 438 Gene3D Tubby Protein; Chain A 126 438 IPR025659 -
Viun8g00196 438 Pfam Tub family 129 433 IPR000007 -
Viun8g00196 438 SUPERFAMILY Tubby C-terminal domain-like 117 438 IPR025659 -
Viun8g00196 438 PRINTS Tubby superfamily signature 251 278 IPR000007 -
Viun8g00196 438 PRINTS Tubby superfamily signature 348 365 IPR000007 -
Viun8g00196 438 PRINTS Tubby superfamily signature 184 200 IPR000007 -
Viun8g00196 438 PRINTS Tubby superfamily signature 200 224 IPR000007 -
Viun8g00196 438 PRINTS Tubby superfamily signature 395 414 IPR000007 -
Viun8g00196 438 PRINTS Tubby superfamily signature 366 382 IPR000007 -
Viun8g00196 438 PRINTS Tubby superfamily signature 416 438 IPR000007 -
Viun8g00196 438 MobiDBLite consensus disorder prediction 23 67 - -
Viun8g00196 438 MobiDBLite consensus disorder prediction 329 343 - -
Viun8g00196 438 PANTHER TUBBY-RELATED 36 436 - -
Viun8g00196 438 Pfam F-box domain 68 115 IPR001810 GO:0005515
Viun8g00196 438 ProSitePatterns Tub family signature 1. 366 379 IPR018066 -
Viun8g00196 438 Gene3D - 61 114 - -
Viun8g00196 438 MobiDBLite consensus disorder prediction 42 67 - -
Viun8g00196 438 CDD F-box_AtTLP-like 68 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00196 Viun-Chr8 1259002 1262528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Viun8g00196 Tub 4.3e-104 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00196 8 1259002 1262528 Viun8g00196 8 1259002 1262528 ECH