Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00143 ATGAAGATCCAATGCGACGTGTGTAACAAACACGATGCATCGGTCTTTTGCACCGCCGATGAAGCCGTCCTCTGCGACGGCTGCGACCACCGCATCCACCACGCCAACAAACTCGCCTCCAAACACCAACGTTTCTCTCTTCTTCGACCCAAACAACACCCTCTCTGCGATGTTTGTCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGATAGGGCGATTCTGTGCAGAGAGTGTGACGTGTCGATTCACTCTGCGAACGAACACACCCTTAAGCATGATAGGTTCCTTCTCACTGGTGTGAAACTTTCTGCTTCTTCTTCATCGCAGGAAACCCCTTCTCCTTCAAACTCTGCCCCTGATTCTCTTTTTCACGTTTCGAATCAAAAAACAATACCTTTATCTTCCACCGTGAGTAAGGTTGGTGTTGAAGCAATGGGTTCCGCAAGTGCTAGCAGCATATCGGAGTATCTGATAGAGACTCTTCCTGGGTGGCAGGTTGAAGACTTTCTCGATTCATATTCTGTTGCCTTTGGTTTCTCCAAGAGTGATGAAGCGTTGCCACGGTTTGATGGTGACATGGAGAGTCATCTGGGTTCTTTCTCAACAGAGAACGTGGGAATATGGGTTCCTCAAGCGCCGCCACCTCTTCTGAGTTCTTCACAGATGAACAGAGTGATTGGTCAAAACGAAACCAACAACATCAAAGGTAGCAGCAGATCGAGGTTGAAGGATGATAATTTCACTGTGCCACAGATTAGTCCTCAGTCAAATTCCAAGAGAGGAAGGTTTCTGTGGTAG 801 0.4794 MKIQCDVCNKHDASVFCTADEAVLCDGCDHRIHHANKLASKHQRFSLLRPKQHPLCDVCQERRAFTFCQQDRAILCRECDVSIHSANEHTLKHDRFLLTGVKLSASSSSQETPSPSNSAPDSLFHVSNQKTIPLSSTVSKVGVEAMGSASASSISEYLIETLPGWQVEDFLDSYSVAFGFSKSDEALPRFDGDMESHLGSFSTENVGIWVPQAPPPLLSSSQMNRVIGQNETNNIKGSSRSRLKDDNFTVPQISPQSNSKRGRFLW 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00143 266 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Viun8g00143 266 CDD Bbox1_BBX-like 5 47 - -
Viun8g00143 266 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
Viun8g00143 266 CDD Bbox1_BBX-like 55 98 - -
Viun8g00143 266 Gene3D Classic Zinc Finger 1 93 - -
Viun8g00143 266 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun8g00143 266 FunFam B-box zinc finger protein 21 1 96 - -
Viun8g00143 266 SMART bboxneu5 51 98 IPR000315 GO:0008270
Viun8g00143 266 SMART bboxneu5 4 47 IPR000315 GO:0008270
Viun8g00143 266 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 259 - -
Viun8g00143 266 MobiDBLite consensus disorder prediction 244 266 - -
Viun8g00143 266 MobiDBLite consensus disorder prediction 231 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00143 Viun-Chr8 911916 913581 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g00143 zf-B_box 3.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00143 8 911916 913581 Viun9g03636 9 41790441 41791923 PCT