Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00122 ATGGGAGTCCCAGCCTTCTACCGGTGGCTGGCCGAGAAGTATCCGATGGTGATTGTGGACGCGATCGAAGAGGAAGCGGTTGTAATCGACGGCATTCAAATCCCGGTCGATGCGAGCAAGGAGAACCCTAACAACATTGAATACGATAACCTCTACCTCGACATGAATGGCATCATTCATCCCTGCTTCCACCCCGAGGATAGGCCTTCTCCGACGTCGTTCGATGAGGTGTTTGAGTGCATGTTTGACTACATTGACAGGCTGTTTGTTATGGTGCGGCCGCGGAAGCTGCTCTACATGGCTATTGATGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAACGGTCTAGGCGGTTTAGGGCTGCGAAAGATGCTGCTGATGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGCAGAAAACTTTCTCCTAAAGCAGAGTCCCAAACGTTTGATTCAAATGTCATTACACCAGGAACTGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAATGGTTTTGATCCAAATACACGACATTGCCTATATGGTTTGGATGCCGATTTGATTATGTTGGCATTGGCTACCCATGAAGTTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGCCATTTGGCAGCAAACTGCGAAGGAAAGGAAAAAAGAAAGGCAGGAGAGTTTGATGAAAAAGGAGAGGCTGTCGTGGCTAAAAAGCCATACCAGTTCCTGAATATTTGGACTCTAAGAGAATATCTGGAGTATGAGATGAGAATACCTAATCCTCCTTTCGAGTTTGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGCTTTTTTGTCGGCAATGATTTTCTTCCACATATGCCTACACTAGAGATTCGTGAGGGTGCAATCAACTTGCTGATAGCAGTATACAAGAAGGAATTTAGGGAATTGGGCGGTTATTTAACCAATGGTAGCACGATAAATTTGAGCAGGGTGGAGCACTTCATTCAGGCTGTTGGATCTTATGAAGATAAAATATTTCAGAAAAGGGCTCGATTGCATCAGCGACAAGTGGAAAGAATAAAGCGTGAGAAGGCACAGGCAAGAAGGGGAGATGACACCGAGCCTCAATTTCAACCAGAGTCTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCAACACCATCACCATTTCAACAATCTGGGCATTATAACTCTCCAGTGTCCTCATCAGTTAAAAAATACCATAAAGAAACCTCTGAGAGGCCCCATAAAGTGGCTAGATTATCTTCAGGAGCCACTCTTGCTGCTGCTATCGTTGAAGCCGAGAGTAGTGTTGAAATAGAAGAAAAAGATAATAAAGATGAATTGAAAACAAAATTGAAGGAGATACTTCGCGAGAAATCTGATGTATTCAACTCAAAAGATGCCGAAGAGGACAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTCATGCTAAAACTCCTGAGGAACTTGAAGCGATACGGAAAGATGTTGTCTTGAAGTACACTGAAGGCCTATGTTGGGTGATGCACTATTATTACGAAGGTGTTTGTTCTTGGAACTGGTTTTATCCATATCACTATGCCCCCTTTGCGTCTGATCTCAAGGACCTTGGTGAACTTGATATTAGTTTTAATCTGGGTACCCCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCAAGCTCTCATGCTCTTCCTGAGCCGTATAGGAGACTTATGACAGAACCAAACTCACCTATCATTGATTTTTATCCTGTTGATTTTGAAGTTGACATGAATGGAAAACGCTTTGCTTGGCAGGGTATTGCCAAGTTACCTTTTATTGATGAAGGGCGTCTTCTTGCAGAAGTTCAGAAGATTGAAAATTTTTTAACACCAGAGGAAAAGCGACGGAATGCTATAATGTATGACTTGCTCTTTGTGAATTCTTGTCACCCTCTTTCTGCATGCATAAGTACACTGGACAACAAGTGTAAAAACATGTCAAACAGTGAACGGGCTTTGGTGAAGGAAAAAATCAATCCCATAGAAAGTGGTGGAATGAATGGTTACTTATCTTTATGCGGTGGAGAACCTTGCCCTCCTGTCTTTAGGTCTCCTGTTGCCAGCATGGAAGATATCATGGACAATCAAGTTATATGCGCAATATATAGACTTCCAGATGCTCATAAACACATTACCCGACCACCACAAGGAGTTAAATTTCCTAATAAGTCTGTTACCATTGGGGATCTAAAACCTGAACCTGTTTTATGGCATGAAGATTCGGGTAGGAGACATCACACTGAAAATGGGAGGAGAAACCACCCTCCAGGGTCTTCTGGTCGGGAGCTTGGAGATGCTGCACACAGACTCGTTGTGAATTCCTTACAGATGAAGGTTGACTCCAATGGCTACCGTCACCCACATAATGGACCTCCTATATCTTATCCTGCACCAATGGGTCATCGACCACCGGTGTCTTCCTATGGTTACGAATCACACCCAGGATACGTTGCAATGCCACCTGTTCCTGCTCCCTCACTCCATGGCAGACCCCACTTGGCACCTTACAATGCTCAGCAGTATGGCTATAATCAACAATACCTACCTCCCCCGGTACCATACAATCCTCATCAGCCATCAAATTCTTACGAAAGAAATGATTATCAACACCCTGGATCACATCATTATGAAAGAAATCAGCATCAGGGTAGTGGGGGTAGGTATAATCAGCATCAATCCTCAGGATATAATCAGAACGCCAGGTTTATCAACAATACGCAAGGTGCATATGGTAGTCACCATCATGATGTTAGTCATCATCACCAAGTTATTCACCACAACCCAAACTTCCAACCATCTAGAACCCATCAGAGTTGGACTCCGCGAAACAATCAGAGTGGAAACAGGGAATATGGTCATCATTCCTCCAATCAATTTTCTTTATTAGATAGAAGAGGAAACAGGAATCCAATGCCACCACCTGGTTACGATCGCCAATAG 3225 0.4344 MGVPAFYRWLAEKYPMVIVDAIEEEAVVIDGIQIPVDASKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEARLREEFEKEGRKLSPKAESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLNGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHLAANCEGKEKRKAGEFDEKGEAVVAKKPYQFLNIWTLREYLEYEMRIPNPPFEFDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFRELGGYLTNGSTINLSRVEHFIQAVGSYEDKIFQKRARLHQRQVERIKREKAQARRGDDTEPQFQPESLVAVSRFHGSRLASAPTPSPFQQSGHYNSPVSSSVKKYHKETSERPHKVARLSSGATLAAAIVEAESSVEIEEKDNKDELKTKLKEILREKSDVFNSKDAEEDKIKLGEPGWKERYYEEKFHAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKDLGELDISFNLGTPFKPFDQLLGVFPAASSHALPEPYRRLMTEPNSPIIDFYPVDFEVDMNGKRFAWQGIAKLPFIDEGRLLAEVQKIENFLTPEEKRRNAIMYDLLFVNSCHPLSACISTLDNKCKNMSNSERALVKEKINPIESGGMNGYLSLCGGEPCPPVFRSPVASMEDIMDNQVICAIYRLPDAHKHITRPPQGVKFPNKSVTIGDLKPEPVLWHEDSGRRHHTENGRRNHPPGSSGRELGDAAHRLVVNSLQMKVDSNGYRHPHNGPPISYPAPMGHRPPVSSYGYESHPGYVAMPPVPAPSLHGRPHLAPYNAQQYGYNQQYLPPPVPYNPHQPSNSYERNDYQHPGSHHYERNQHQGSGGRYNQHQSSGYNQNARFINNTQGAYGSHHHDVSHHHQVIHHNPNFQPSRTHQSWTPRNNQSGNREYGHHSSNQFSLLDRRGNRNPMPPPGYDRQ 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00122 1074 MobiDBLite consensus disorder prediction 834 858 - -
Viun8g00122 1074 MobiDBLite consensus disorder prediction 938 989 - -
Viun8g00122 1074 FunFam 5'-3' exoribonuclease 614 714 - -
Viun8g00122 1074 Coils Coil 407 427 - -
Viun8g00122 1074 Gene3D - 613 714 - -
Viun8g00122 1074 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Viun8g00122 1074 PIRSF Exonuclease_Xrn2 1 1053 IPR017151 GO:0004534|GO:0005634|GO:0006139
Viun8g00122 1074 CDD PIN_XRN1-2-like 51 312 - -
Viun8g00122 1074 FunFam 5'-3' exoribonuclease 149 372 - -
Viun8g00122 1074 FunFam 5'-3' exoribonuclease 1 136 - -
Viun8g00122 1074 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Viun8g00122 1074 MobiDBLite consensus disorder prediction 1019 1059 - -
Viun8g00122 1074 MobiDBLite consensus disorder prediction 453 474 - -
Viun8g00122 1074 Pfam Xrn1 helical domain 325 824 IPR041412 -
Viun8g00122 1074 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Viun8g00122 1074 PANTHER 5'->3' EXORIBONUCLEASE 1 1014 IPR027073 -
Viun8g00122 1074 MobiDBLite consensus disorder prediction 1002 1074 - -
Viun8g00122 1074 Coils Coil 122 142 - -
Viun8g00122 1074 Coils Coil 508 528 - -
Viun8g00122 1074 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Viun8g00122 1074 Gene3D - 144 373 - -
Viun8g00122 1074 Gene3D - 1 134 - -
Viun8g00122 1074 MobiDBLite consensus disorder prediction 449 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00122 Viun-Chr8 707154 720180 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00122 8 707154 720180 Viun8g00122 8 707154 720180 ECH