Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00087 ATGAGGAAGTGGACGGTTGCTTCCGTTCTCCTTCTACTCTGTCTCCTCTTTCTCTTTGCAGATCAAGGTCGAAAGTTTCAGGCGAATGCCGCGGGCGATTCCGGCGGCGTTGTAGATCCGCCCAAGGTGGAGGACAAGATCGGCGCTGTTCCTGGCGGCCTTTCCACCGATTCAGATGTGGTCAAAAGGGAGGCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCGACGCCGAGAAGTTTGAGTTCCAAGCGGAAGTGTCACGGCTCATGGATATTATCATCAACTCTCTCTATAGTAACAAGGATATCTTCCTGAGAGAGTTGATTTCCAATGCTTCTGACGCTTTGGACAAGATTAGGTTCCTCTCTCTCACGGACAAGGAGGTTTTGGGAGAAGGTGATAACACTAAGCTTGATATTCAGATTAAGTTAGACAAGGAAAAGAAAATTCTCTCGATCAGAGACCGGGGTATTGGTATGACGAAGGAGGATTTGATTAAGAATTTGGGGACAATTGCTAAATCTGGAACTTCAGCGTTTGTTGAGAAAATGCAAACAAGTGGAGATCTCAATCTCATTGGGCAGTTTGGTGTCGGCTTTTACTCTGTGTATCTCGTGGCTGACTATGTTGAAGTTATTAGCAAGCATAATGATGATAAGCAGTATGTATGGGAATCAAAAGCTGATGGAGCTTTTGCAATCTCGGAAGATACATGGAACCAACCTCTAGGACGTGGAACCGAGATTAGACTACACCTCAAAGAAGAGGCTGGGGAGTACTTGGAGGAATCTAAACTGAAAGAATTGGTGAAGAGGTACTCTGAATTTATTAACTTCCCTATCTATATTTGGGCAAGCAAAGAGGTTGATGTGGAGGTTCCCGCAGACGAAGACGGTGATGAAGATGATTCTGCTGATGGCAGCTCCAAAGAGGAAACCGAAGACGAAGATGCTGATAAAGGTGAAGATGAAGACAAGCCTAAGACAAAGACAGTGAAGGAAACAACTTACGAATGGGAACTTCTAAATGATGTGAAAGCTATATGGCTGAGGAATCCAAAGGAGGTTACCGAGGAAGAATACACCAAATTCTATCACTCTCTTGCCAAGGATTTCAGTGATGATAAACCTCTATCGTGGAGTCACTTCACTGCCGAAGGTGATGTAGAGTTCAAGGCAGTCCTGTTTGTACCACCTAAGGCACCTCATGATTTATACGAGAGCTATTACAACGCAAACAAATCCAACCTGAAGTTGTATGTTAGACGAGTGTTCATTTCAGACGAGTTTGATGAACTGTTGCCCAAGTACCTAAACTTCTTGAGGGGTCTTGTTGATTCCGACACATTGCCACTTAATGTATCGCGAGAAATGCTTCAACAACATAATAGTCTAAAGACAATCAAGAAGAAACTTATCAGGAAAGCCCTTGACATGATCCGTAGGATTGCTGATGAGGATCCTGACGAGTCCACCGACAAAGAAAAGAAAGAAGATGCATCCTCTGACAACAATGAGAAGAAAGGTCAGTATGTCAAGTTCTGGAATGAGTTTGGTAAATCCATTAAACTTGGTATCATCGAGGATGCCACTAACAGAAATCGGTTGGCAAAATTGCTCAGATTTGAGAGCACCAAGTCTGATGGTAAATTGACATCCCTGGATCAGTACATATCTAGAATGAAAGCTGGCCAGAAGGACATCTTTTACATAACCGGAACCAACAAAGAACAACTGGAAAAATCCCCATTCCTTGAACGGCTTAAGAAGAAAAATTTTGAGGTTATTTACTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGATGGATTATGAAGATAAAAAGTTCCAAAATGTGTCCAAGGAGGGTTTGAAACTCGGGAAGGATACGAAAAACAAGGAACTGAAGGAATCCTTTAAGGATCTTACCAAGTGGTGGAAAAGTACTCTATCCAAGGACAATGTCGACGATGTGAAGATATCCAACCGATTGGATAACACTCCTTGTGTAGTAGTGACATCAAAATATGGTTGGAGTGCAAACATGGAGCGAATCATGCAGTCTCAAACTTTGTCAGATGCTAGCAAGCAAGCATACATGCGTGGGAAGAGGGTGCTTGAGATCAATCCTAGGCACCCAATTATCAAGGAGCTCCGCGAGAGAGTAGTAAAGAACCCCGAGGATGAGGGTGTGAAACAAACAGCACAGCTGATGTATCAGACTGCACTCTTCGAGAGTGGCTTCAATCTTGATGATCCCAAGGATTTCAGTTCCCGTATTTATGACTCAGTGAAGTCTAGCTTGAACATCAGTCCTGATGCAACAGTTGAAGAGGAAGATGACACCGAGGCAGAGGCTGAAAGTGAGGCTAAAGAAGATACTCCAAAAAAGCCTGAAGCTGAAGTTGATGATGACGTTGACGATACCAAAGACGAGTTGTAG 2448 0.4363 MRKWTVASVLLLLCLLFLFADQGRKFQANAAGDSGGVVDPPKVEDKIGAVPGGLSTDSDVVKREAESISKRSLRSDAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLDIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNQPLGRGTEIRLHLKEEAGEYLEESKLKELVKRYSEFINFPIYIWASKEVDVEVPADEDGDEDDSADGSSKEETEDEDADKGEDEDKPKTKTVKETTYEWELLNDVKAIWLRNPKEVTEEEYTKFYHSLAKDFSDDKPLSWSHFTAEGDVEFKAVLFVPPKAPHDLYESYYNANKSNLKLYVRRVFISDEFDELLPKYLNFLRGLVDSDTLPLNVSREMLQQHNSLKTIKKKLIRKALDMIRRIADEDPDESTDKEKKEDASSDNNEKKGQYVKFWNEFGKSIKLGIIEDATNRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGTNKEQLEKSPFLERLKKKNFEVIYFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKNKELKESFKDLTKWWKSTLSKDNVDDVKISNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKNPEDEGVKQTAQLMYQTALFESGFNLDDPKDFSSRIYDSVKSSLNISPDATVEEEDDTEAEAESEAKEDTPKKPEAEVDDDVDDTKDEL 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00087 815 CDD HATPase_Hsp90-like 87 277 IPR020575 -
Viun8g00087 815 SUPERFAMILY Ribosomal protein S5 domain 2-like 345 624 IPR020568 -
Viun8g00087 815 MobiDBLite consensus disorder prediction 769 815 - -
Viun8g00087 815 MobiDBLite consensus disorder prediction 484 505 - -
Viun8g00087 815 Gene3D - 537 625 - -
Viun8g00087 815 MobiDBLite consensus disorder prediction 295 332 - -
Viun8g00087 815 Gene3D - 65 299 IPR036890 -
Viun8g00087 815 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Viun8g00087 815 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 71 790 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Viun8g00087 815 MobiDBLite consensus disorder prediction 791 805 - -
Viun8g00087 815 PIRSF HSP90_HTPG 55 811 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Viun8g00087 815 MobiDBLite consensus disorder prediction 295 321 - -
Viun8g00087 815 Gene3D - 631 777 IPR037196 -
Viun8g00087 815 SMART HKATPase_4 100 257 IPR003594 -
Viun8g00087 815 FunFam Heat shock protein 90 69 303 - -
Viun8g00087 815 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
Viun8g00087 815 FunFam Endoplasmin-like isoform B 631 777 - -
Viun8g00087 815 Gene3D - 344 536 - -
Viun8g00087 815 Hamap Chaperone protein HtpG [htpG]. 75 767 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Viun8g00087 815 FunFam endoplasmin homolog 344 536 - -
Viun8g00087 815 Pfam Hsp90 protein 259 795 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Viun8g00087 815 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
Viun8g00087 815 SUPERFAMILY HSP90 C-terminal domain 643 765 IPR037196 -
Viun8g00087 815 MobiDBLite consensus disorder prediction 776 790 - -
Viun8g00087 815 FunFam endoplasmin homolog 537 624 - -
Viun8g00087 815 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Viun8g00087 815 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Viun8g00087 815 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Viun8g00087 815 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Viun8g00087 815 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Viun8g00087 815 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Viun8g00087 815 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00087 Viun-Chr8 439860 444595 Dispersed