Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00074 ATGGTTACCACTGCCAAATCTCCCAATCATCACTCTTCGTCTACTGCTCCACCGCAGGTGCAGTCTGCCGATGTCAGTCCCAAGTTTCCGCGGAAAAATCTTCCCTCTCCCTGGGCTCAAGTGGTTCGCGGCGGAGAACCGGAATCTGTGCCTGGCATTTATCAATCGCCGCCGTCAACGTCATCCTCCTCCTCATCACTGATTGCCGACCAGGTCTTCTCCTCTGACTCTCCTCCCAAGATCATTCCGGCGTCGCCGCCGATGGACAATTCTAACACGGTTGCTGTTGCCGATAGCTTTGATGTCGCCGAGGACAATGCTGATCGTTCTAAGAAACCCGTTTGGAATAAGCCCTCAAACGGTGTCGTCCTGGAGACTGGGCCCGTAATGGGCGCTGAATCGTGGCCCGCGTTGTCTGCATCCACCAAAGGTTCTGCCAAATTGCCAGCTGAATCGTCGTCTAAGACCGTTGCTGATGGATCACTCTCAACTTCTCAGGCGCCAATGACTTCACAGGCTCCTCAGAAGCAATCTAATACTAATGCGAAAGCTAATCCTGCAACAAATTACAATGTGCCTGCTAGACAAAGATCGATGAAGCGGGTAGGTGGCAGTGGCATTGTGTCAGGTCCTTCCCAGAGCAACTTCTCCAATCCTCCACCACCACCGCCACCGCCACCTTTTCCTGTATACCATCTCCCACCAGTTAGCTATGGTATGGTAACAGTGGTACCTGAGCCTGCTCCAAGAGATCATTACCGGAACAGTAATTGGGACCCAAGACCAATGGTGGGGGGTTTTGTGCCTGGGATGAATGAATATCGTGGTTCATCTCACAGGAGTTATTTTGGGCATAATCCCCGAGGAGATGGTTCCTATCATAATAGCTACGGTAGCAGGCATGATCAAGATCGCCGAAATTATGGGAATACTAGAGACACTTTTGTACCTCAACCAAGGATGCCTCCAAGAGGATTACTGAGGCACCCACCTCCTAGCTCTGCTGCTTTTGTGGGCCCTCAGCCCATTGGGCCATTTGCTAACCCCATGGGTTTTTCTGAGTTTTATTACTATCAGCCAGTAACAATGGAACAGTTTACTGGTATGCCGTACTTCACTCCCAGCCCTGCTCCTACAACATTCATTTCTGCTACTGAATCTGCTCTCTCCAATATGATACTCCGCCAAATTGAATATTACTTTAGTGATGCTAATTTGGTGAGAGATGAGTTTTTAAGGTCTAAAATGGATGAACAGGGTTGGGTTCCTGTTACTTTGATAGCAGACTTCCCTCGAGTTAAAAGTCTTACCACTAATGTTCAGTTGATACTGGATTCTCTGAGAACTTCCGCAATAGTGGAAGTGCTGGGTGACAAGTTGAGAAGACATAATGAGTGGATGAGATGGGTGTCTTCTAAAACACGGCCTGAGTCTACTTCCACTTCATCGTCTCCCCGTGGATCAAGATCTAATAACTTATCTAATTTTCAAGGTATAACCCTGGCAGAAACTGCAGAGTCATGCAGTCTGACTCAACTCTCCAATGGTGGTGCTACCGGAAGTAGCACTTGA 1572 0.4866 MVTTAKSPNHHSSSTAPPQVQSADVSPKFPRKNLPSPWAQVVRGGEPESVPGIYQSPPSTSSSSSSLIADQVFSSDSPPKIIPASPPMDNSNTVAVADSFDVAEDNADRSKKPVWNKPSNGVVLETGPVMGAESWPALSASTKGSAKLPAESSSKTVADGSLSTSQAPMTSQAPQKQSNTNAKANPATNYNVPARQRSMKRVGGSGIVSGPSQSNFSNPPPPPPPPPFPVYHLPPVSYGMVTVVPEPAPRDHYRNSNWDPRPMVGGFVPGMNEYRGSSHRSYFGHNPRGDGSYHNSYGSRHDQDRRNYGNTRDTFVPQPRMPPRGLLRHPPPSSAAFVGPQPIGPFANPMGFSEFYYYQPVTMEQFTGMPYFTPSPAPTTFISATESALSNMILRQIEYYFSDANLVRDEFLRSKMDEQGWVPVTLIADFPRVKSLTTNVQLILDSLRTSAIVEVLGDKLRRHNEWMRWVSSKTRPESTSTSSSPRGSRSNNLSNFQGITLAETAESCSLTQLSNGGATGSST 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00074 523 SMART la 387 463 IPR006630 -
Viun8g00074 523 MobiDBLite consensus disorder prediction 1 22 - -
Viun8g00074 523 MobiDBLite consensus disorder prediction 285 323 - -
Viun8g00074 523 FunFam la-related protein 1B isoform X2 379 469 - -
Viun8g00074 523 MobiDBLite consensus disorder prediction 471 494 - -
Viun8g00074 523 ProSiteProfiles La-type HTH domain profile. 383 472 IPR006630 -
Viun8g00074 523 SUPERFAMILY "Winged helix" DNA-binding domain 383 471 IPR036390 -
Viun8g00074 523 MobiDBLite consensus disorder prediction 138 195 - -
Viun8g00074 523 MobiDBLite consensus disorder prediction 1 225 - -
Viun8g00074 523 MobiDBLite consensus disorder prediction 53 73 - -
Viun8g00074 523 Pfam La domain 393 448 IPR006630 -
Viun8g00074 523 PANTHER LUPUS LA PROTEIN-RELATED 132 473 IPR045180 -
Viun8g00074 523 CDD LAM 391 462 - -
Viun8g00074 523 Gene3D - 381 473 IPR036388 -
Viun8g00074 523 MobiDBLite consensus disorder prediction 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00074 Viun-Chr8 351902 356394 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00074 8 351902 356394 Viun8g00074 8 351902 356394 ECH
Viun8g00074 8 351902 356394 Viun9g03702 9 42207100 42211553 PCT