Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03860 ATGGCTACGGATGCCCGTGACTCGCGTCACAAGCATCGCCGATCACCCTCCCCGGAGGACGTAGACAGATCCTCGAAGCGCCACAAGCACCGCCACCACGGCCACCGCCACCGCCACCGCCACGGGAGCAAAAAGCGCGACGAAGATATTGAATTCGATGATCGAACCATTGCTGCTGTTCCTTCTCCAACTCCGCATAGACATCTCCCGGAGGACGATGTGGAGGAAGGAGAGATCCTCGATGACGAAGCTCTCGATAGTGAGGTAGGGAGAAAAGAGACGGAATCTGATGTCGAACCTGGTGAAATCAAGGTGACTGGAGATCGAGATGTTCAATCTGATAATCAAAATTCGGGACACCTGGCTGTAAATTCAGAAACTAATGAGGACATCAAGGTTCATAAATTTATTACTCCTGCAACCAATGCAGATGGTGTCTCTCCTAATCGTTTAAGTGCCGAGACTCAAGATGGAAAGCTTGCTACAGATGGTCTGGACAATGGTTATTTGAATCCTAAATCTTCCAGGGCGGATAAGTGGCGAAATGGGGAACCTGGACATTTTAAAGGGAATGAGAAACTAAAAGGTGACTTTGATAATGAAGCACTGGAGGTTGATGTTAGGAAAACATATTTCCATAGGAATTCGTCATCTGAAAGTGGAGGAGACAAAGGTAGAATATCAGGAAGTTCTCCTTCTCATGGCAGATATAGAAGTCGATCAAGATCAATTGGTCATACAAGAGACAGGTCTCGTTCTCGTAGTGTCATTGATGAATATGTTCATTCCAAGAGAAGGCGCTCTGACTATGACTATGATGAGGAAAGAGTGAGGGCACGAGGAAGGGAACATGGTCATGGAAGTGTGGTAGATGATAGAAGGGAATACAGTAGTGGATATCACAATCGCGAGGCCCATGATAGAGATAGGAGTAGGGATAGAGACTTGTACAGAGAAAAGAAACAAGAGGAAACAAGCCGGGGTAAGGAGATTGAGAGGGACCGCCAAAGGGGAAAGGAACGTGAAAGGAGCCGTGAGAGATATAGAAGGGATGTAGAAAAAGATAGGAGCAGGGAAAGGGAGGATAGGGACAGGAGGCAAGAAAAGGAAAGGGATAGGAGCTGGGAGACAGTATTTGAGAGGGATATGAGAAGGGAAAAGGAAAGAGATAGAAGTAGGGACAGAACAAGAGATGCTAAGAGAGATAGAGACCTGGAGAATGAAAGGGATGATAAGAATCGAGAAAGAGATAATATAAAGGAGAGGGAAAGGCGAGATGATAGATATAGGCACAAAGATAGAGACACTGCAAATGGTAAAGATAGGCACGTGCGTCATGAAGATGGTAATGACAATGGAGATAGATATAGAAAACATTCGAGACATGAAGAAAATGATTACCATTGGGATAGAAAAAGAAATTCTGGTAATCCTGTAAAGGATTATACCTCAAGGGTAAGTACTGCAGAAGTGGATGAAAGCAAACGAACAAGCAGTGAGGTTGAACCAGATGACTTAGAGGAGGATACATTGCACTTACCTGACCAAGAAGAGGAAGATCTCAACAGGATCAAAGAAGAGAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAATCAGCATCAGAAAGTAGAAGTGGTTGGAAATGAACGAAAAGACAAGGATGCAGACATTCACACTGAAATCTCTGAAGCACATGATGGTAAGAATGATGATGCTGATTATGTGGAGCCATCATTTGCTGTTGGAAAATCTCCTGAAAATGTGAATGTTGCTTCTCAGAAGATATCTCTCGCTGGAGGCCTAGGAGAGGGTACTCCAAAGAGTGAAAGATCAGAGGACAAGTACTGTGACGATATATTTGGGGAGACACCAACGGGAGTTCGAAAATCAGGAAAAGGTGATGGTTTAATGATTGAAAGGGTTGGCCTACATGACAACTGGGATGATGCAGAGGGATACTACAGCTATCGAATTGGTGAAATACTTGATGGCCGATATGAAGTCGCTGCTGCACATGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTGAAGGTGGGAAATGGTGAGCCAGAGGAAGTAGCAATAAAAATAATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTCCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATACGCCAAACAGCTTTTTATTGCCTTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGACATAAAGCCAGATAATATGTTGGTAAACGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCAGAAATAATACTTGGCTTGGCATACGATCATCCGTTGGATATTTGGTCTGTAGGCTGTTGTTTGTACGAGTTATATGTAGGTAAGGTTCTTTTCCCTGGGCTTACTAACAATGACATGCTACGACTTCACATGGAACTGAAAGGCCCTTTTCCAAAGAAGATGTTACGAAAGGGAGCATTTACTGAACAACATTTTGATCAGGACCTGAATTTTCTTGCAACCGAGGAAGATCCTGTGACAAAAAAGGCCATAAAGCGGCTGATTCTCAACATCAAGCCAAAAGATATTGGGACACTCATCACTGGCTCTACCGGGGAGGATCCAAAAATGTTAGCCAACTTTAAGGATCTTCTGGAAAAAGTTTTTGTCTTGGATCCAGACAAGAGGCTGACAGTGTCACAAGCTCTGAACCACCCATTCATCACTGGCAAGTGA 2964 0.4329 MATDARDSRHKHRRSPSPEDVDRSSKRHKHRHHGHRHRHRHGSKKRDEDIEFDDRTIAAVPSPTPHRHLPEDDVEEGEILDDEALDSEVGRKETESDVEPGEIKVTGDRDVQSDNQNSGHLAVNSETNEDIKVHKFITPATNADGVSPNRLSAETQDGKLATDGLDNGYLNPKSSRADKWRNGEPGHFKGNEKLKGDFDNEALEVDVRKTYFHRNSSSESGGDKGRISGSSPSHGRYRSRSRSIGHTRDRSRSRSVIDEYVHSKRRRSDYDYDEERVRARGREHGHGSVVDDRREYSSGYHNREAHDRDRSRDRDLYREKKQEETSRGKEIERDRQRGKERERSRERYRRDVEKDRSREREDRDRRQEKERDRSWETVFERDMRREKERDRSRDRTRDAKRDRDLENERDDKNRERDNIKERERRDDRYRHKDRDTANGKDRHVRHEDGNDNGDRYRKHSRHEENDYHWDRKRNSGNPVKDYTSRVSTAEVDESKRTSSEVEPDDLEEDTLHLPDQEEEDLNRIKEESRRRREAIMEKYKNQHQKVEVVGNERKDKDADIHTEISEAHDGKNDDADYVEPSFAVGKSPENVNVASQKISLAGGLGEGTPKSERSEDKYCDDIFGETPTGVRKSGKGDGLMIERVGLHDNWDDAEGYYSYRIGEILDGRYEVAAAHGRGVFSTVVRAKNLKVGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLAYDHPLDIWSVGCCLYELYVGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKAIKRLILNIKPKDIGTLITGSTGEDPKMLANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03860 987 MobiDBLite consensus disorder prediction 142 156 - -
Viun7g03860 987 MobiDBLite consensus disorder prediction 26 43 - -
Viun7g03860 987 Pfam Protein kinase domain 673 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03860 987 FunFam serine/threonine-protein kinase PRP4 homolog 639 728 - -
Viun7g03860 987 MobiDBLite consensus disorder prediction 177 199 - -
Viun7g03860 987 MobiDBLite consensus disorder prediction 211 528 - -
Viun7g03860 987 SMART serkin_6 669 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03860 987 MobiDBLite consensus disorder prediction 84 109 - -
Viun7g03860 987 PANTHER DUAL SPECIFICITY PROTEIN KINASE 377 985 - -
Viun7g03860 987 Gene3D Phosphorylase Kinase; domain 1 639 728 - -
Viun7g03860 987 Coils Coil 402 425 - -
Viun7g03860 987 MobiDBLite consensus disorder prediction 486 502 - -
Viun7g03860 987 MobiDBLite consensus disorder prediction 140 199 - -
Viun7g03860 987 MobiDBLite consensus disorder prediction 110 125 - -
Viun7g03860 987 SUPERFAMILY Protein kinase-like (PK-like) 656 986 IPR011009 -
Viun7g03860 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Viun7g03860 987 MobiDBLite consensus disorder prediction 214 238 - -
Viun7g03860 987 MobiDBLite consensus disorder prediction 1 127 - -
Viun7g03860 987 ProSiteProfiles Protein kinase domain profile. 669 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03860 987 CDD STKc_PRP4 668 984 IPR044092 GO:0004674|GO:0006468|GO:0045292
Viun7g03860 987 MobiDBLite consensus disorder prediction 242 478 - -
Viun7g03860 987 Gene3D Transferase(Phosphotransferase) domain 1 729 985 - -
Viun7g03860 987 MobiDBLite consensus disorder prediction 1 25 - -
Viun7g03860 987 FunFam Serine/threonine-protein kinase PRP4 homolog 729 985 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03860 Viun-Chr7 38718502 38724964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03860 676 985 MAP Kinase Gene Family AT4G01370 33.856 4.24e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Viun7g03860 Pkinase 3.1e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03860 7 38718502 38724964 Viun7g03860 7 38718502 38724964 ECH