Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03756 ATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAACGGCGGATTCGGACCCGCTTCCGCCTCTGGTCAACTGCCGTCGAACGGAGGCTACGGTTCGTTGTACTCAGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCGAACTGCAGCAACGGCGGCGGCGTTTCGCTGTACCCGTACTCCGAGTCAGCAACTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAACCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGTCAGCTCCGGGCCGCAAACAAGGAGTTGCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGACTCAGTTTGCCGCCGCCGGAAGTGGCTCCTCCGGCCAGACTCAACCGACGCTGTTCGATGTCTTGCATGGCTTCCGCAGCCTCAACATTGGGGAAGGCAAAGAGAATTATGCCGATTGGAATAACAACAGTAATCATAATCACAACAATATTATGAATAATAATAATAACAAGGACCTGCAGGAAGTTTCGGACGAGAGTCCAACGAGCGTGATGGAGAATAACGTGGTGGAAGTTGAGAGATTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGTTACTTGAAGATGGCTCAGTCTGCTGCTCTTGCCACCAATAATAATGCAACTCGCAATAAAGGTGCCACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTCAGAAGGTATATGTGCGGGGAGGGCAGAAAGAGGAAGAGCCTCTGGAAATGGTGGTGTATAACCAGGGGATGTTCAAAACTGAGCTGTGTAATAAGTGGCAGGAAACTGGTACATGCCCATACGGAGACCACTGCCAATTTGCGCACGGTATTGGGGAGCTTCGCCCAGTCATTCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTGGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAG 1095 0.5297 MLNKDACSPSSNGGFGPASASGQLPSNGGYGSLYSALSNDNLPSLSANCSNGGGVSLYPYSESATQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRAANKELQKQLHLVIQASLETQFAAAGSGSSGQTQPTLFDVLHGFRSLNIGEGKENYADWNNNSNHNHNNIMNNNNNKDLQEVSDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAALATNNNATRNKGATRPRATATPPEAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03756 364 FunFam zinc finger CCCH domain-containing protein 15-like 273 312 - -
Viun7g03756 364 SUPERFAMILY CCCH zinc finger 276 311 IPR036855 GO:0046872
Viun7g03756 364 MobiDBLite consensus disorder prediction 1 20 - -
Viun7g03756 364 FunFam Zinc finger protein 36, C3H1 type-like 1 313 349 - -
Viun7g03756 364 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Viun7g03756 364 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Viun7g03756 364 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 351 IPR045877 GO:0003729
Viun7g03756 364 Coils Coil 89 116 - -
Viun7g03756 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Viun7g03756 364 SUPERFAMILY CCCH zinc finger 313 347 IPR036855 GO:0046872
Viun7g03756 364 Gene3D - 313 349 - -
Viun7g03756 364 Gene3D - 274 312 - -
Viun7g03756 364 SMART c3hfinal6 279 306 IPR000571 GO:0046872
Viun7g03756 364 SMART c3hfinal6 317 344 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03756 60 359 C3H Transcription Factor Family AT1G68200 49.351 3.81e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun7g03756 zf-CCCH 3e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03756 7 38019471 38022809 Viun7g03756 7 38019471 38022809 ECH