Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02819 ATGATACAGGAAGATCAAGGGCAGTGTTCTTCTCAAGCGATCAATAACTACCACCAGGCCTATCAAGACCAGCTTCTCCTTCAGCAACAGATGCAGCAGCATCAACAAAACAATGATATCTTTGGTGGAGGAGGAGGAGTGGGAGGAGGAAGAGGAGGGCTCAACATGTACCCTGGTGAAGTCTCTCAAATCATGCATCAACCCTGGTCTATGCCTCATAATCCGGTTCATCACCCCTTCAACACGGTGAGAGAGCATGACCCTTTTCTTGTCCCTCCCCAACCTTCACCCTATGCAACTTTGTTCAACCGAAGGGGTCATTCTCTTCAGTTTGCATATGATGGTTCGTCTTCTGACCATCTTAGGATCATATCGGACACCCTTGGACCGGTCGTTCAACCCGGTTCCGCACCCTTTGGCCTCCAAACCGAGTTGGCTAAGATGACTGCTCAAGAAATCATGGAGGCCAAAGCCCTCGCAGCATCCAAGAGTCACAGTGAGGCTGAAAGGAGGCGCAGAGAGAGGATCAATAACCATCTTGCCAAGCTTCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCATTGATAGCAGAATCGAGTCCGGTTCCTACGGAGGCTGATGAGTTAACTGTGGTGGATGAAGCGGATGAAGATGGGAGGTCTGTGATCAAAGCCTCTTTGTGCTGTGAAGATAGGTCAGATCTGTTTCCTGAACTCATCAGGACCCTGAAAGCATTGAGGCTAAGAACCCTTAAAGCTGAGATCACAACGCTGGGAGGGCGTGTGAAGAACGTGTTGTTCATCACCGGGGAAGAGGAAGACTCGAGCAGCGGCAGCGAGGACCACAACCACCAACAACAGTACTGCATTAGCTCAATACAAGAAGCACTGAAGGCAGTGATGGAGAAGAGCGTGGGTGATGAGTCTGCTTCAGCAAATATTAAGAGACAAAGGACCAATATAATATCAATGTCCTAG 1038 0.4894 MIQEDQGQCSSQAINNYHQAYQDQLLLQQQMQQHQQNNDIFGGGGGVGGGRGGLNMYPGEVSQIMHQPWSMPHNPVHHPFNTVREHDPFLVPPQPSPYATLFNRRGHSLQFAYDGSSSDHLRIISDTLGPVVQPGSAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEADELTVVDEADEDGRSVIKASLCCEDRSDLFPELIRTLKALRLRTLKAEITTLGGRVKNVLFITGEEEDSSSGSEDHNHQQQYCISSIQEALKAVMEKSVGDESASANIKRQRTNIISMS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02819 345 PANTHER TRANSCRIPTION FACTOR BHLH30 35 341 IPR045847 GO:0003700|GO:0006355
Viun7g02819 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 216 IPR036638 GO:0046983
Viun7g02819 345 FunFam transcription factor bHLH30 155 218 - -
Viun7g02819 345 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Viun7g02819 345 CDD bHLH_AtAIG1_like 155 231 - -
Viun7g02819 345 CDD ACT_UUR-ACR-like 246 289 - -
Viun7g02819 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Viun7g02819 345 Gene3D - 155 216 IPR036638 GO:0046983
Viun7g02819 345 SMART finulus 166 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02819 Viun-Chr7 31533033 31535707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02819 10 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.183 6.61e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g02819 HLH 1.7e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02819 7 31533033 31535707 Viun7g02819 7 31533033 31535707 ECH