Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02812 ATGGACACTTCCACGGATGAAACCACCACAACCAGCGAATCTCTTTCCCTTCCTCCCAACCTATCTCCGCCTCCTCTAATCCGCGTCGGAAGCGCCGGCGTCGACCCCGACGCCGTTTCCGGCGAGGCCGAATCCCGCAAACTTCCGTCCTCCAAATACAAAGGCGTGGTGCCGCAACCCAACGGTCGTTGGGGCGCTCAGATTTACGAGAAGCACCAGCGAGTCTGGCTTGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCGGCGCAGAGGTTCCGAGGCCGCGACGCTGTCACAAACTTCAAGCCTCTTGCCGGAGCAGGCGACGACGCAGAGTCCGAGTTCCTTAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTCCGCAAGCACACCTACGACGACGAGCTCCAGCAGAGCACTCGCGGCGGCAGGCGCCGCCGCTACGCCGGCGCCGCCTCCAGCGGTGCGTACGATGCGAAGGCGCGTGAGCAGCTGTTCGAGAAAACGGTCACTCCCAGCGACGTCGGCAAGCTGAATAGATTGGTTATACCGAAGCAGCACGCGGAGAAGCACTTCCCGTTGAGCAGCGGATCCGGTAGCGGAGTCTCACCGTGCACTGCTGCGGCGGCGGCGGCGAAGGGAGTGCTGCTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTTACAAAAGGATGGAGCCGGTTTGTGAAGGAGAATAATCTGAGAGCCGGTGACGCGGTTCGGTTTTTCAAGTCAACCGGACCGGACCGGCAGCTTTATATAGACTGCAAGGCCAGGAGCAGTGGCGGTATTTGTGAGCTTAATAACAATAATGGTGGCGGTTTGTTTGTCCCGGTGGGACCAGTTGTTGAGCCGGTTCAGATGGTTCGGCTTTTCGGGGTGAACCTTTTGAAACTACCCGGCTCGGATGGTGTACGGGTTGGCTATGAGGGGAAGCGGAAAGAGATGGAACTGTTTGCATTTGAATGTAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1083 0.5753 MDTSTDETTTTSESLSLPPNLSPPPLIRVGSAGVDPDAVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLAGAGDDAESEFLNSHSKSEIVDMLRKHTYDDELQQSTRGGRRRRYAGAASSGAYDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSSGSGSGVSPCTAAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKENNLRAGDAVRFFKSTGPDRQLYIDCKARSSGGICELNNNNGGGLFVPVGPVVEPVQMVRLFGVNLLKLPGSDGVRVGYEGKRKEMELFAFECSKKLKVIGAL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02812 360 MobiDBLite consensus disorder prediction 1 17 - -
Viun7g02812 360 Gene3D AP2/ERF domain 51 108 IPR036955 GO:0003700|GO:0006355
Viun7g02812 360 SMART B3_2 172 286 IPR003340 GO:0003677
Viun7g02812 360 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Viun7g02812 360 CDD B3_DNA 171 281 IPR003340 GO:0003677
Viun7g02812 360 ProSiteProfiles B3 DNA-binding domain profile. 172 287 IPR003340 GO:0003677
Viun7g02812 360 SUPERFAMILY DNA-binding pseudobarrel domain 170 283 IPR015300 -
Viun7g02812 360 Gene3D - 160 291 IPR015300 -
Viun7g02812 360 Pfam B3 DNA binding domain 172 270 IPR003340 GO:0003677
Viun7g02812 360 MobiDBLite consensus disorder prediction 1 56 - -
Viun7g02812 360 SUPERFAMILY DNA-binding domain 51 107 IPR016177 GO:0003677
Viun7g02812 360 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Viun7g02812 360 Pfam AP2 domain 51 99 IPR001471 GO:0003700|GO:0006355
Viun7g02812 360 CDD AP2 51 106 IPR001471 GO:0003700|GO:0006355
Viun7g02812 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 47 333 IPR044800 GO:0003700
Viun7g02812 360 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02812 Viun-Chr7 31442782 31444394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02812 3 360 B3 DNA Binding Superfamily AT1G25560 57.623 3.74e-135 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Viun7g02812 B3 2.5e-26 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02812 7 31442782 31444394 Viun7g02812 7 31442782 31444394 ECH