Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02765 ATGTCGGGTAACTGTGAGAAAATGGTTGTCATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATCACAAGGTCTTGATGGGTTCCTTTGGTGGAAGCAACAACACTAAGGTAATGGAAAAACCAGATCAAGAGCTTGTGCAGCAGCAGCTGCAACAACAAACCCTCAAGTGCCCTCGCTGTGACTCGTCAAACACTAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCACGACACTTCTGCAAAGCCTGCAAGCGCTACTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGTGGGTGCAGAAAAAACAAGCGTGTTAAGCGTCCAATGACAAATTCTTCTGCTGCTGCCATCGACACTGCTTCTTCTTCTAATTCTTCTTCTGCTCTCACCGCTGCTTCGCAACCACAGATCGACACTGCTTCAACCTCCAATCACATCAACCCTTTGTTTTACGGGTTGTCCAGTTGCTCCAGCGATGTCAATCTTCCGCTGTTCCCTAGGTTTGCCTCCAGACTCTCCAGTTCCGGGTTTGATCTTCAGCTGAATAATGCCCTCGGATTAGGTTTTTCATCCGGGGTTGTGTCCAATGAAGCCAGCGAGAATAACAGTTTTAGAAACGGGTTTGGTTCTAATAACGCGCTTCTTTCAAGTTATAATTCCATATTTGGTTCTTCCTCAAGTTCTACATCCACTACTCCAGCCATGTCTTCACTGTTGAGCTCTACCTTGCTTCAGCAGAAGTTCATCGGCAGTGGGTTGAAAGATGGTGTTGATAGCAACAGTTTCCAGCATGGCTTAGGCTTAACCCCACTAGAGCAGTTGCAAATGCCGAGTGATAACAGTGAGGCAGGGATGGTATCTTTAAAAGATGTGAAAGTAGAATTAGGACAAAACAACAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGCATGTGGGCATGTACGATCCCTCGCTTTATTGGAATAATTCAGCAACAGCTTTGGGTGTTTGGAACGATCAAGCTGCTAATATCGGTTCTTCAGTCACTTCTCTGATCTAG 1068 0.4663 MSGNCEKMVVIPPTTNQWPQVDDHKVLMGSFGGSNNTKVMEKPDQELVQQQLQQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPMTNSSAAAIDTASSSNSSSALTAASQPQIDTASTSNHINPLFYGLSSCSSDVNLPLFPRFASRLSSSGFDLQLNNALGLGFSSGVVSNEASENNSFRNGFGSNNALLSSYNSIFGSSSSSTSTTPAMSSLLSSTLLQQKFIGSGLKDGVDSNSFQHGLGLTPLEQLQMPSDNSEAGMVSLKDVKVELGQNNRLEWNGACQNQIQHVGMYDPSLYWNNSATALGVWNDQAANIGSSVTSLI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02765 355 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Viun6g02765 355 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Viun6g02765 355 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Viun6g02765 355 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 236 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02765 Viun-Chr6 31492898 31495107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02765 57 355 C2C2-Dof Transcription Factor Family AT1G28310 43.671 2.22e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun6g02765 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02765 - - gmx:778098 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02765 6 31492898 31495107 Viun6g02765 6 31492898 31495107 ECH