Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02665 ATGGCCGAGGAATCTCAAGGGATTAAGCTGTTTGGCGCAATGATTAGACTGAACAGTGAGGAGGTAAAGAAGGGAGAAAAGGGAAGGGAATACAACAAGAGGGAGGAGAAGAGAACAGAGAAGATAATAGCGTGTCCAAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAATAACTACAACGTTAATCAGCCGAGGCATTTTTGTAAGAGCTGCCAGAGGTATTGGACTGCTGGTGGGGCCCTCCGAAACGTCGCCGTCGGAGCCGGTCGTCGGAAGGGCAAGCCGCCTGGTCATGGTGGCGCTGAGTTCCCCGATGGGGCTGTCTATGAAAGTTCCGAAGATGAGAACAAATTTGAGATGGGAAATAGGTTGCTTTCGGAAGAGGTTCACACTGATTTCCGGCAAATTTTCCCGGCGGCAAAGCGGCGGAGGACTCCATCAGATAAAATTTGGAGAAGTAATTATATTCAGAGATCCAAGAGTTGA 492 0.4817 MAEESQGIKLFGAMIRLNSEEVKKGEKGREYNKREEKRTEKIIACPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKGKPPGHGGAEFPDGAVYESSEDENKFEMGNRLLSEEVHTDFRQIFPAAKRRRTPSDKIWRSNYIQRSKS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02665 163 PANTHER CYCLIC DOF FACTOR 2 28 96 IPR045174 GO:0003700|GO:0006355
Viun6g02665 163 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Viun6g02665 163 Pfam Dof domain, zinc finger 41 96 IPR003851 GO:0003677|GO:0006355
Viun6g02665 163 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02665 Viun-Chr6 30898873 30900716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02665 2 150 C2C2-Dof Transcription Factor Family AT2G34140 51.445 1.06e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun6g02665 zf-Dof 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02665 - - gmx:100820604 211.075